Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g24604 | OGI:04044660 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:14264611-14265168 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAAATACTTCCATTGGTATGCGCAAGAAATAAGCCAATTCGGCAGCTTTTTGTTCAATTTCTCGTGGAGTAAAAAACTTCTCATCAGTACGAGTCAAGGGAATGGCCCCCTGGCCCCAGATTTCCATATAAAGGATACGACGAGGAAAAAGACCTTCTTTAACCTGAATTCTAATTGATTGGATATCCCGCATAAGGAATCGAAGGAAGACGCGACGTTTTATTCCAGGGAATCCCCAACGAAAAATGCACACTACTCCCTCTTTTCTATCGAATCGGTCATAACCACTGCCTACATTCCACAAAATAGTGCACCACAAGTAAGCGCTAATGAATAGGCCTGCGATTCCGTAGAAAGACATCACGACCCCCTGTGGAAAAAAAGGAATTTGTTGAGATGGAAGTACAGATATAATATTCTTACCAAGATAACTGGAAGCCCCAACCGCTAAGAATCCTAGTGAACCTAGAAAAAGAATACAGGCCCAGAAAAAATTACCTCTTTTTCGAGAACCTTTTAGAAGTTCTATCCATATGTGTTCTGATCGCCAATTCAT
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| CDS seq | ATGAATTGGCGATCAGAACACATATGGATAGAACTTCTAAAAGGTTCTCGAAAAAGAGGTAATTTTTTCTGGGCCTGTATTCTTTTTCTAGGTTCACTAGGATTCTTAGCGGTTGGGGCTTCCAGTTATCTTGGTAAGAATATTATATCTGTACTTCCATCTCAACAAATTCCTTTTTTTCCACAGGGGGTCGTGATGTCTTTCTACGGAATCGCAGGCCTATTCATTAGCGCTTACTTGTGGTGCACTATTTTGTGGAATGTAGGCAGTGGTTATGACCGATTCGATAGAAAAGAGGGAGTAGTGTGCATTTTTCGTTGGGGATTCCCTGGAATAAAACGTCGCGTCTTCCTTCGATTCCTTATGCGGGATATCCAATCAATTAGAATTCAGGTTAAAGAAGGTCTTTTTCCTCGTCGTATCCTTTATATGGAAATCTGGGGCCAGGGGGCCATTCCCTTGACTCGTACTGATGAGAAGTTTTTTACTCCACGAGAAATTGAACAAAAAGCTGCCGAATTGGCTTATTTCTTGCGCATACCAATGGAAGTATTTTGA
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| Protein seq | MNWRSEHIWIELLKGSRKRGNFFWACILFLGSLGFLAVGASSYLGKNIISVLPSQQIPFFPQGVVMSFYGIAGLFISAYLWCTILWNVGSGYDRFDRKEGVVCIFRWGFPGIKRRVFLRFLMRDIQSIRIQVKEGLFPRRILYMEIWGQGAIPLTRTDEKFFTPREIEQKAAELAYFLRIPMEVF |
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| Function | Photosystem I assembly protein Ycf4 [UniProtKB/Swiss-Prot:P0C515] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g24604 | LOC_Os02g24604.1 | Chr02 | 14264611 | 14265168 | - | MSU_osa1r7 | ||
| CDS seq | ATGAATTGGCGATCAGAACACATATGGATAGAACTTCTAAAAGGTTCTCGAAAAAGAGGTAATTTTTTCTGGGCCTGTATTCTTTTTCTAGGTTCACTAGGATTCTTAGCGGTTGGGGCTTCCAGTTATCTTGGTAAGAATATTATATCTGTACTTCCATCTCAACAAATTCCTTTTTTTCCACAGGGGGTCGTGATGTCTTTCTACGGAATCGCAGGCCTATTCATTAGCGCTTACTTGTGGTGCACTATTTTGTGGAATGTAGGCAGTGGTTATGACCGATTCGATAGAAAAGAGGGAGTAGTGTGCATTTTTCGTTGGGGATTCCCTGGAATAAAACGTCGCGTCTTCCTTCGATTCCTTATGCGGGATATCCAATCAATTAGAATTCAGGTTAAAGAAGGTCTTTTTCCTCGTCGTATCCTTTATATGGAAATCTGGGGCCAGGGGGCCATTCCCTTGACTCGTACTGATGAGAAGTTTTTTACTCCACGAGAAATTGAACAAAAAGCTGCCGAATTGGCTTATTTCTTGCGCATACCAATGGAAGTATTTTGA
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| Protein seq | MNWRSEHIWIELLKGSRKRGNFFWACILFLGSLGFLAVGASSYLGKNIISVLPSQQIPFFPQGVVMSFYGIAGLFISAYLWCTILWNVGSGYDRFDRKEGVVCIFRWGFPGIKRRVFLRFLMRDIQSIRIQVKEGLFPRRILYMEIWGQGAIPLTRTDEKFFTPREIEQKAAELAYFLRIPMEVF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 55.268616 | 48.546970 | 10.743213 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g059879F | SBH | 62.651623 | 58.994762 | 21.888994 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g58049 | SBH | 325.294983 | 283.518188 | 70.022453 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0015510 | RBH | 87.976479 | 35.859432 | 142.920792 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0015650 | RBH | 10.978106 | 19.987053 | 14.325867 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015550 | RBH | 33.013920 | 0.475163 | 49.047176 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015400 | RBH | 28.082493 | 0.732079 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0347400 | SBH | 2614.951172 | 277.126984 | 260.906357 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0011011 | RBH | 129.142441 | 0.779326 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0020310 | SBH | 1476.451904 | 104.557892 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0020100 | SBH | 263.378326 | 42.602730 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
