Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g20630 | OGI:02033880 | 4/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:12155725-12158221 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGGTCGCATCAGCCGGCGTCAAGTTCTGCCAAAGAATAAGGCACTGAATTACTGGTTCATTGTTTCTTGGAATCATGCGCCTTTGCAACACAGCGACTGGTTCAGTCTTAATCTGTCCCTCAGGACCTACTGCTGGCAGATTAGGCATAGGAACAACATGCTGTCCTAAATGTTTCTTCAATTGACTCACATGAAACACTGGATGGATTCCTACTCCTTCAAGTAATTGCAGCCTGTAAGCAACCTTCCCCACCTTTTCAATAACCTTGAATAGCCCATAGAATTTAGACCTGAGTTTCAGTGATCCCCTAATGCCAAACGCAGCTTGTCTATAGGGCTGCAACTTTAAGTACACCATGTCTCCAACCTCCAACACTCTTTCAGTCCTATTCAAATCGGCATAATGTTTCATTCTTCTCTGAGCTTCACCCATGCTATCCCTCAATTTCTGCAAAATGGCTGCTCTTTCTTTCAGGGTAACCCTTGCTTCTTCAGATACATTGCATGGAATTGAAAATTCATTCACTTGTGGGGGTGGATACCCATACAAAGCTTGGAAAGGAGTCATCTGAATCGATGTACGAAAGGTAGTATTGTACCACCACTCAGCTAGAGCTAACCAGGTAAACCACTGTTGGGGTTCTTGAAAGGTCATACTTCTCAAATATCAGTCCAAGCACTGATTGACTCTTTCGGTTTGGCCATCTGTTTGAGGATGGTAAGCCGTACTGAATCTGAGTTGTACTCTCTTTGCCTTAAAAATCTCTTGAAAGAATTTGCTAGTGAAGATTCTGTCTCTATCGGTCACAATGGCCACAGGCATTCCATGGAGTTTGTGAATGTTATCCATGAACACTTGAATCACATCTTCAACTGTAAATGGATGAGATAGAGCTAAGAAATGGGCATACTTCGTCAACCTATCCACCACAACTAGTATAACATCCTTCCCTTTAGATTTAGGCAAGCCCTCTATGAAATCCATGCTGATATGTGTCTAGGCCATATCAGGTACTTCCAATGGATTCAGCAACCCAGGAATGTGTACATGTTCTGCTTTTGTTACTTGACATATGGGACAAGATCTGATAAAATTCTCTGTTGCTTTCTTGAGACCAGGCCAGTAAAACAACTTTTTAATTCTGTGATAAGTAGCCCTGATTCCTGAGTGACCTCCAAATGCAGATGCATAATATGCTTGTAACAACATCTGCCTAATGTCAGTACTCTCTCCCACATAAATTCTTCCTTGATATTTTAATAACCCTGCCTCCATTCTGTAATTGCCAGTAGGATCTACCTCAGTTCCTATTATGCTCAAGAACTTATGTGCCTGAATATCTCCTTCATAACTCATTTTGATATCCTGTACCCATTCAGGAATTACTACAGCCACAGTTGAACATTGTTCATCCTCACCTACTTTGAGATTAGGACTCCGAGATAGGCCATCTGCCACTAAATTATCCTTTCCTGCCTTGTACTCAATAGTGTAATCGTACTCCAGTAGTTTCAATAACAGCTTGTGTTGTATTCCTTCAACCAACCTTTGCCCCATCATGTATTTGAGACTCTGCTGATCAGTTTTAATCACCAACTTTCCCCCTAGCACATAGTGTCTCCACTTTTTGAATGCCTCTAGTATTGCCATGGCTTCCTTTTCATAAATTGATTGGGCTGCTGCCTTTGGTCCCAAAGCTTTGCTATAATAAGAGATTGGTCTTCCTCCCTGCATTAAAACTGCCCCAATCCCATATCCACAAGCATCAGCTTCAATTACAAATGGCTGATCAAAGTTTGGCAGAGCTAGGACTGTACTACTACACATTTTCTCCTTTAACAGCTCAAAAGCTTCCTGTTGAGACTGCCCCCAACTGAACCCATCCTTCTTTAACATATTGTGTAATGGTCTGCATATTTCACGATATCCTTTAATGAATCTTCTATAATAACCAGTCAATCCCAGAAATGCCCTCAATACAGTTACACTGGTAGGTGCGTTTCGATGTTTGATGTCACTGATTTTTTTTGGATCAGTAGAAACCCCTTCTTCAGAAATAACATGGCCCAAGTATGACACCTTGCTAAGGCCAGACTCACACTAGCTGATTCTCCATTAAAGCTTGCATCACCAACCTAATATGTCCCAGATGTTCCTCTTTGTTGTTACTGTATATCAAAATATCATCGAAAAACACCAATACAAATTTCCTGATGTAAGGAGCTAGGACCTGGCTCATCAATGACTGAAATGTTGCCGGCGCATTCGTTAACCCAAATGGCATTACATTATACTCATAATGCCCCAAATGAGTTCTGAAAGCTGTCTTTGGGATGTCTTTCTCAGCCATCCTAATTTGATGGTATCCTGACCTGAGATCTAGCTTAGAGAATATTTTAGCCCCATTCAGCTCATCTAGCAGGTCTTCAATTATAGGCATAGGGAACTTGTTCTTAATAGTCTGAGCATTTAACTGGTGATAATCAACGCACAT
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| CDS seq | ATGTGCGTTGATTATCACCAGTTAAATGCTCAGACTATTAAGAACAAGTTCCCTATGCCTATAATTGAAGACCTGCTAGATGAGCTGAATGGGGCTAAAATATTCTCTAAGCTAGATCTCAGGTCAGGATACCATCAAATTAGGATGGCTGAGAAAGACATCCCAAAGACAGCTTTCAGAACTCATTTGGGGCATTATGAGTATAATGTAATGCCATTTGGGTTAACGAATGCGCCGGCAACATTTCAGTCATTGATGAGCCAGGTCCTAGCTCCTTACATCAGGAAATTTGTATTGGTGTTTTTCGATGATATTTTGATATACAGTAACAACAAAGAGGAACATCTGGGACATATTAGGTTGGTGATGCAAGCTTTAATGGAGAATCAGCTAGTACCATTACACAATATGTTAAAGAAGGATGGGTTCAGTTGGGGGCAGTCTCAACAGGAAGCTTTTGAGCTGTTAAAGGAGAAAATGTGTAGTAGTACAGTCCTAGCTCTGCCAAACTTTGATCAGCCATTTGTAATTGAAGCTGATGCTTGTGGATATGGGATTGGGGCAGTTTTAATGCAGGGAGGAAGACCAATCTCTTATTATAGCAAAGCTTTGGGACCAAAGGCAGCAGCCCAATCAATTTATGAAAAGGAAGCCATGGCAATACTAGAGGCATTCAAAAAGTGGAGACACTATGTGCTAGGGGGAAAGTTGGTGATTAAAACTGATCAGCAGAGTCTCAAATACATGATGGGGCAAAGGTTGGTTGAAGGAATACAACACAAGCTGTTATTGAAACTACTGGAGTACGATTACACTATTGAGTACAAGGCAGGAAAGGATAATTTAGTGGCAGATGGCCTATCTCGGAGTCCTAATCTCAAAGTAGGTGAGGATGAACAATGTTCAACTGTGGCTGTAGTAATTCCTGAATGGGTACAGGATATCAAAATGAGTTATGAAGGAGATATTCAGGCACATAAGTTCTTGAGCATAATAGGAACTGAGGTAGATCCTACTGGCAATTACAGAATGGAGGCAGGGTTATTAAAATATCAAGGAAGAATTTATGTGGGAGAGAGTACTGACATTAGGCAGATGTTGTTACAAGCATATTATGCATCTGCATTTGGAGGTCACTCAGGAATCAGGGCTACTTATCACAGAATTAAAAAGTTGTTTTACTGGCCTGGTCTCAAGAAAGCAACAGAGAATTTTATCAGATCTTGTCCCATATGTCAAGTAACAAAAGCAGAACATACACATATCAGCATGGATTTCATAGAGGGCTTGCCTAAATCTAAAGGGAAGGATGTTATACTAGTTGTGGTGGATAGGTTGACGAAGTATGCCCATTTCTTAGCTCTATCTCATCCATTTACAGTTGAAGATGTGATTCAAGTGTTCATGGATAACATTCACAAACTCCATGGAATGCCTGTGGCCATTGTGACCGATAGAGACAGAATCTTCACTAGCAAATTCTTTCAAGAGATTTTTAAGGCAAAGAGAATGACTCCTTTCCAAGCTTTGTATGGGTATCCACCCCCACAAGTGAATGAATTTTCAATTCCATGCAATGTATCTGAAGAAGCAAGGGTTACCCTGAAAGAAAGAGCAGCCATTTTGCAGAAATTGAGGGATAGCATGGGTGAAGCTCAGAGAAGAATGAAACATTATGCCGATTTGAATAGGACTGAAAGAGTGTTGGAGGTTGGAGACATGGTGTACTTAAAGTTGCAGCCCTATAGACAAGCTGCGTTTGGCATTAGGGGATCACTGAAACTCAGGTCTAAATTCTATGGGCTATTCAAGGTTATTGAAAAGGTGGGGAAGGTTGCTTACAGGCTGCAATTACTTGAAGGAGTAGGAATCCATCCAGTGTTTCATGTGAGTCAATTGAAGAAACATTTAGGACAGCATGTTGTTCCTATGCCTAATCTGCCAGCAGTAGGTCCTGAGGGACAGATTAAGACTGAACCAGTCGCTGTGTTGCAAAGGCGCATGATTCCAAGAAACAATGAACCAGTAATTCAGTGCCTTATTCTTTGGCAGAACTTGACGCCGGCTGATGCGACCTAG
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| Protein seq | MCVDYHQLNAQTIKNKFPMPIIEDLLDELNGAKIFSKLDLRSGYHQIRMAEKDIPKTAFRTHLGHYEYNVMPFGLTNAPATFQSLMSQVLAPYIRKFVLVFFDDILIYSNNKEEHLGHIRLVMQALMENQLVPLHNMLKKDGFSWGQSQQEAFELLKEKMCSSTVLALPNFDQPFVIEADACGYGIGAVLMQGGRPISYYSKALGPKAAAQSIYEKEAMAILEAFKKWRHYVLGGKLVIKTDQQSLKYMMGQRLVEGIQHKLLLKLLEYDYTIEYKAGKDNLVADGLSRSPNLKVGEDEQCSTVAVVIPEWVQDIKMSYEGDIQAHKFLSIIGTEVDPTGNYRMEAGLLKYQGRIYVGESTDIRQMLLQAYYASAFGGHSGIRATYHRIKKLFYWPGLKKATENFIRSCPICQVTKAEHTHISMDFIEGLPKSKGKDVILVVVDRLTKYAHFLALSHPFTVEDVIQVFMDNIHKLHGMPVAIVTDRDRIFTSKFFQEIFKAKRMTPFQALYGYPPPQVNEFSIPCNVSEEARVTLKERAAILQKLRDSMGEAQRRMKHYADLNRTERVLEVGDMVYLKLQPYRQAAFGIRGSLKLRSKFYGLFKVIEKVGKVAYRLQLLEGVGIHPVFHVSQLKKHLGQHVVPMPNLPAVGPEGQIKTEPVAVLQRRMIPRNNEPVIQCLILWQNLTPADAT |
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| Function | Transposon Ty3-I Gag-Pol polyprotein [UniProtKB/Swiss-Prot:Q7LHG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g20630 | LOC_Os02g20630.1 | Chr02 | 12155725 | 12158221 | - | MSU_osa1r7 | ||
| CDS seq | ATGTGCGTTGATTATCACCAGTTAAATGCTCAGACTATTAAGAACAAGTTCCCTATGCCTATAATTGAAGACCTGCTAGATGAGCTGAATGGGGCTAAAATATTCTCTAAGCTAGATCTCAGGTCAGGATACCATCAAATTAGGATGGCTGAGAAAGACATCCCAAAGACAGCTTTCAGAACTCATTTGGGGCATTATGAGTATAATGTAATGCCATTTGGGTTAACGAATGCGCCGGCAACATTTCAGTCATTGATGAGCCAGGTCCTAGCTCCTTACATCAGGAAATTTGTATTGGTGTTTTTCGATGATATTTTGATATACAGTAACAACAAAGAGGAACATCTGGGACATATTAGGTTGGTGATGCAAGCTTTAATGGAGAATCAGCTAGTACCATTACACAATATGTTAAAGAAGGATGGGTTCAGTTGGGGGCAGTCTCAACAGGAAGCTTTTGAGCTGTTAAAGGAGAAAATGTGTAGTAGTACAGTCCTAGCTCTGCCAAACTTTGATCAGCCATTTGTAATTGAAGCTGATGCTTGTGGATATGGGATTGGGGCAGTTTTAATGCAGGGAGGAAGACCAATCTCTTATTATAGCAAAGCTTTGGGACCAAAGGCAGCAGCCCAATCAATTTATGAAAAGGAAGCCATGGCAATACTAGAGGCATTCAAAAAGTGGAGACACTATGTGCTAGGGGGAAAGTTGGTGATTAAAACTGATCAGCAGAGTCTCAAATACATGATGGGGCAAAGGTTGGTTGAAGGAATACAACACAAGCTGTTATTGAAACTACTGGAGTACGATTACACTATTGAGTACAAGGCAGGAAAGGATAATTTAGTGGCAGATGGCCTATCTCGGAGTCCTAATCTCAAAGTAGGTGAGGATGAACAATGTTCAACTGTGGCTGTAGTAATTCCTGAATGGGTACAGGATATCAAAATGAGTTATGAAGGAGATATTCAGGCACATAAGTTCTTGAGCATAATAGGAACTGAGGTAGATCCTACTGGCAATTACAGAATGGAGGCAGGGTTATTAAAATATCAAGGAAGAATTTATGTGGGAGAGAGTACTGACATTAGGCAGATGTTGTTACAAGCATATTATGCATCTGCATTTGGAGGTCACTCAGGAATCAGGGCTACTTATCACAGAATTAAAAAGTTGTTTTACTGGCCTGGTCTCAAGAAAGCAACAGAGAATTTTATCAGATCTTGTCCCATATGTCAAGTAACAAAAGCAGAACATACACATATCAGCATGGATTTCATAGAGGGCTTGCCTAAATCTAAAGGGAAGGATGTTATACTAGTTGTGGTGGATAGGTTGACGAAGTATGCCCATTTCTTAGCTCTATCTCATCCATTTACAGTTGAAGATGTGATTCAAGTGTTCATGGATAACATTCACAAACTCCATGGAATGCCTGTGGCCATTGTGACCGATAGAGACAGAATCTTCACTAGCAAATTCTTTCAAGAGATTTTTAAGGCAAAGAGAATGACTCCTTTCCAAGCTTTGTATGGGTATCCACCCCCACAAGTGAATGAATTTTCAATTCCATGCAATGTATCTGAAGAAGCAAGGGTTACCCTGAAAGAAAGAGCAGCCATTTTGCAGAAATTGAGGGATAGCATGGGTGAAGCTCAGAGAAGAATGAAACATTATGCCGATTTGAATAGGACTGAAAGAGTGTTGGAGGTTGGAGACATGGTGTACTTAAAGTTGCAGCCCTATAGACAAGCTGCGTTTGGCATTAGGGGATCACTGAAACTCAGGTCTAAATTCTATGGGCTATTCAAGGTTATTGAAAAGGTGGGGAAGGTTGCTTACAGGCTGCAATTACTTGAAGGAGTAGGAATCCATCCAGTGTTTCATGTGAGTCAATTGAAGAAACATTTAGGACAGCATGTTGTTCCTATGCCTAATCTGCCAGCAGTAGGTCCTGAGGGACAGATTAAGACTGAACCAGTCGCTGTGTTGCAAAGGCGCATGATTCCAAGAAACAATGAACCAGTAATTCAGTGCCTTATTCTTTGGCAGAACTTGACGCCGGCTGATGCGACCTAG
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| Protein seq | MCVDYHQLNAQTIKNKFPMPIIEDLLDELNGAKIFSKLDLRSGYHQIRMAEKDIPKTAFRTHLGHYEYNVMPFGLTNAPATFQSLMSQVLAPYIRKFVLVFFDDILIYSNNKEEHLGHIRLVMQALMENQLVPLHNMLKKDGFSWGQSQQEAFELLKEKMCSSTVLALPNFDQPFVIEADACGYGIGAVLMQGGRPISYYSKALGPKAAAQSIYEKEAMAILEAFKKWRHYVLGGKLVIKTDQQSLKYMMGQRLVEGIQHKLLLKLLEYDYTIEYKAGKDNLVADGLSRSPNLKVGEDEQCSTVAVVIPEWVQDIKMSYEGDIQAHKFLSIIGTEVDPTGNYRMEAGLLKYQGRIYVGESTDIRQMLLQAYYASAFGGHSGIRATYHRIKKLFYWPGLKKATENFIRSCPICQVTKAEHTHISMDFIEGLPKSKGKDVILVVVDRLTKYAHFLALSHPFTVEDVIQVFMDNIHKLHGMPVAIVTDRDRIFTSKFFQEIFKAKRMTPFQALYGYPPPQVNEFSIPCNVSEEARVTLKERAAILQKLRDSMGEAQRRMKHYADLNRTERVLEVGDMVYLKLQPYRQAAFGIRGSLKLRSKFYGLFKVIEKVGKVAYRLQLLEGVGIHPVFHVSQLKKHLGQHVVPMPNLPAVGPEGQIKTEPVAVLQRRMIPRNNEPVIQCLILWQNLTPADAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.154681 | 0.000000 | 0.184544 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0272800 | SBH | 1.659576 | 0.996415 | 3.277498 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0012111 | SBH | 0.182933 | 2.695740 | 2.795457 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0011981 | SBH | 0.908975 | 3.743392 | 9.726171 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0193000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0011611 | SBH | 0.221207 | 0.433718 | 1.412136 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0204700 | RBH | 0.0021825 | 0 | 0.0143665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G014171 | RBH | 0.195609 | 0.475429 | 0.505240 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
