Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g20210 | OGI:02033220 | 7/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:11902747-11904935 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACAATAAATGCGTTAGTTTCTCTTTACTTCCAAGACTGGCAGCTTTTGCTTGAGCTTCCGTTACATTTTCTAGACCAGTCAACTCTAATTCTCCGACAAGATTTATGTTTTCGAGTTCGGAAACATTGCTGCAACTAGAGCTAGAACCCACCACAAAAAAGGTTAATGTCTGTAGAGAAGTCAGTTGTCCAAGGTCAGGAGGCATGCATTCCAATGATTCACATCCACCAGTGTAGATATGGCGAAGGTTTTTCATATACTTCATAGCATTTGGAAGCCGGCATAGAGAGTCACAATCAGAAACGTCCATTGTCAGTAGATTATATAGTAAACTTATTTCTTCAGGAAGTTTTTTGATCCACCAATTGTTGGAAAAGTTAAGATACCTAATGTATTGCAAGTGCCTTGGCCTGATTGGAAGTTTTCTCAATCGACAGAGTTGCATTGCCCGTAAAGAATTGTGCTTTGATAACCGTGGTGGAGAGACATAAGTGTAGGGATCTGTATATAACAACGTTTGGAGTGTTGGAGATTGCTTCTTCAGCATACCATCCAGATGAGTGTGAATTTCTCGGTATGATATGAACAAGTGGCGAGTAGGATTTATAAATGACTTCATGTCGGGCATATTGACTATGGTTGCACATTCTTTCCCCATAACAGATAGAGCCACATCATGCATAAGATCATGTATCTTGCACACCATTATGTAACGGAATTTTGGTCTTCTTACATAATAACCAGTCGGTGGAGGGGCTTGTTCCACATCTTGAAAGAATGATCTCCAAGCTAGATCATTAAAAATTTCTTTGCCTACCATGTCAGGGTTATCTTCCTCCCGTGCAGGTATAAAGTCATGAGCCATCCAATGTTGGATCAATCTCTCCACATTAATCGGATAATCTTTGGGAAACAAAGCACAAAATGCAAAGCATTGCTTCATGTGTGGTGGTAGGTCATCGTAGCTGAGCTTTAGTATAGGTAAAATCTCTGTCTTCTCATTGCAAATGTTGCTTTTGACTAATATATCCTTCCATTCTTGCATGCTAGTCTTGGTACTCAACATAGAGCCAAATGCTTTGGCTGCCAAAGGAGAACCGACACATCTGTCCACAATCTTGTCAACAATTACATCTAGCTCGTCACTGTTTGGCTTTTGCACTCTGAATGCTCTGCTCTGGATTATTTCCTTCATATACTTGTTACCCAATTTTTCAAGGTTATATGCTCCAGGTACACCCATGGTCATAACTCGAGCTACTTCTGCATCACGAGTTGTTGTCAGTATCGTACTGCCCCTGCCACCTTGCTTAAGGCATGTCAACAGTTTTCCCCACTTGTCAGCATCCCGATTCCATACATCATCCAGCACAATAAGGTATCTCTGTCCACTTAATTCTTTCTGGAGATCCTGCAAAGCTTTCTCATGATTTTTCTCCTGGCTATGGCAGATGTTTCTTGCAATGTTACCAATGTCGAAATCATCTGACACACAACACCACCTTTGGAGACTGAAATGCTCCTTGACTTGAGGTTCATTGTAAATGAGTTGCACAAAAGTAGTCTTGCCCAAACCACCCATTCCAACGATAGGAAGAACCATGAGACCCCCATTTCCCTCCTGCTCAACCAATATCTTTATGATCTTCTCCTTCTCCTCGTTCCTAGATCTGCTGGCAATGTCCTTGTCAGAGTCAATCATTATGCTATCAGTCTGCCGCCACTGCATCGATGGTGTCACTTGCTGCCTTTGTGTGAATCCAAAGTCATTCATCTGTCTGACAAGGACATCCATGGTACGCACAACCTTGCTCAGCTTCTTGCTCATTCTGTAACGGAATACAATAGGGTTACGAGAAGGGAAGAGGCTTATAACATCCATACCGAGCTTGTTGTAGTGCCCCTTTTTCTTGGCATCACGCCGGAGCGCTTCATACTTGAACTCATCAAAGACATCGATCACTTCATAGGACACATTCTTGAGTGCTTCGAGCCAAGCACTACTCCTGGTCGGCTAGCCCCCTTCTGTGCATCTTCAATGACATCCAGGATGGCCGGAAGCTTGCGTGCCAGGCTATCACGCTGCTCTTCCATGCCTTTCATCACCTTGTACTGCTCCACAAGGTAGCTCGACACCTTCTCCTTCAGCAAGGAGACCAGCGGCCTGATCACCACCATCTCTGCCAT
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| CDS seq | ATGGCAGAGATGGTGGTGATCAGGCCGCTGGTCTCCTTGCTGAAGGAGAAGGTGTCGAGCTACCTTGTGGAGCAGTACAAGGTGATGAAAGGCATGGAAGAGCAGCGTGATAGCCTGGCACGCAAGCTTCCGGCCATCCTGGATGTCATTGAAGATGCACAGAAGGGGGCTAGCCGACCAGGAGTATTCAAGTATGAAGCGCTCCGGCGTGATGCCAAGAAAAAGGGGCACTACAACAAGCTCGGTATGGATGTTATAAGCCTCTTCCCTTCTCGTAACCCTATTGTATTCCGTTACAGAATGAGCAAGAAGCTGAGCAAGGTTGTGCGTACCATGGATGTCCTTGTCAGACAGATGAATGACTTTGGATTCACACAAAGGCAGCAAGTGACACCATCGATGCAGTGGCGGCAGACTGATAGCATAATGATTGACTCTGACAAGGACATTGCCAGCAGATCTAGGAACGAGGAGAAGGAGAAGATCATAAAGATATTGGTTGAGCAGGAGGGAAATGGGGGTCTCATGGTTCTTCCTATCGTTGGAATGGGTGGTTTGGGCAAGACTACTTTTGTGCAACTCATTTACAATGAACCTCAAGTCAAGGAGCATTTCAGTCTCCAAAGGTGGTGTTGTGTGTCAGATGATTTCGACATTGGTAACATTGCAAGAAACATCTGCCATAGCCAGGAGAAAAATCATGAGAAAGCTTTGCAGGATCTCCAGAAAGAATTAAGTGGACAGAGATACCTTATTGTGCTGGATGATGTATGGAATCGGGATGCTGACAAGTGGGGAAAACTGTTGACATGCCTTAAGCAAGGTGGCAGGGGCAGTACGATACTGACAACAACTCGTGATGCAGAAGTAGCTCGAGTTATGACCATGGGTGTACCTGGAGCATATAACCTTGAAAAATTGGGTAACAAGTATATGAAGGAAATAATCCAGAGCAGAGCATTCAGAGTGCAAAAGCCAAACAGTGACGAGCTAGATGTAATTGTTGACAAGATTGTGGACAGATGTGTCGGTTCTCCTTTGGCAGCCAAAGCATTTGGCTCTATGTTGAGTACCAAGACTAGCATGCAAGAATGGAAGGATATATTAGTCAAAAGCAACATTTGCAATGAGAAGACAGAGATTTTACCTATACTAAAGCTCAGCTACGATGACCTACCACCACACATGAAGCAATGCTTTGCATTTTGTGCTTTGTTTCCCAAAGATTATCCGATTAATGTGGAGAGATTGATCCAACATTGGATGGCTCATGACTTTATACCTGCACGGGAGGAAGATAACCCTGACATGGTAGGCAAAGAAATTTTTAATGATCTAGCTTGGAGATCATTCTTTCAAGATGTGGAACAAGCCCCTCCACCGACTGGTTATTATGTAAGAAGACCAAAATTCCGTTACATAATGGTGTGCAAGATACATGATCTTATGCATGATGTGGCTCTATCTGTTATGGGGAAAGAATGTGCAACCATAGTCAATATGCCCGACATGAAGTCATTTATAAATCCTACTCGCCACTTGTTCATATCATACCGAGAAATTCACACTCATCTGGATGGTATGCTGAAGAAGCAATCTCCAACACTCCAAACGTTGTTATATACAGATCCCTACACTTATGTCTCTCCACCACGGTTATCAAAGCACAATTCTTTACGGGCAATGCAACTCTGTCGATTGAGAAAACTTCCAATCAGGCCAAGGCACTTGCAATACATTAGGTATCTTAACTTTTCCAACAATTGGTGGATCAAAAAACTTCCTGAAGAAATAAGTTTACTATATAATCTACTGACAATGGACGTTTCTGATTGTGACTCTCTATGCCGGCTTCCAAATGCTATGAAGTATATGAAAAACCTTCGCCATATCTACACTGGTGGATGTGAATCATTGGAATGCATGCCTCCTGACCTTGGACAACTGACTTCTCTACAGACATTAACCTTTTTTGTGGTGGGTTCTAGCTCTAGTTGCAGCAATGTTTCCGAACTCGAAAACATAAATCTTGTCGGAGAATTAGAGTTGACTGGTCTAGAAAATGTAACGGAAGCTCAAGCAAAAGCTGCCAGTCTTGGAAGTAAAGAGAAACTAACGCATTTATTGTAG
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| Protein seq | MAEMVVIRPLVSLLKEKVSSYLVEQYKVMKGMEEQRDSLARKLPAILDVIEDAQKGASRPGVFKYEALRRDAKKKGHYNKLGMDVISLFPSRNPIVFRYRMSKKLSKVVRTMDVLVRQMNDFGFTQRQQVTPSMQWRQTDSIMIDSDKDIASRSRNEEKEKIIKILVEQEGNGGLMVLPIVGMGGLGKTTFVQLIYNEPQVKEHFSLQRWCCVSDDFDIGNIARNICHSQEKNHEKALQDLQKELSGQRYLIVLDDVWNRDADKWGKLLTCLKQGGRGSTILTTTRDAEVARVMTMGVPGAYNLEKLGNKYMKEIIQSRAFRVQKPNSDELDVIVDKIVDRCVGSPLAAKAFGSMLSTKTSMQEWKDILVKSNICNEKTEILPILKLSYDDLPPHMKQCFAFCALFPKDYPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLAWRSFFQDVEQAPPPTGYYVRRPKFRYIMVCKIHDLMHDVALSVMGKECATIVNMPDMKSFINPTRHLFISYREIHTHLDGMLKKQSPTLQTLLYTDPYTYVSPPRLSKHNSLRAMQLCRLRKLPIRPRHLQYIRYLNFSNNWWIKKLPEEISLLYNLLTMDVSDCDSLCRLPNAMKYMKNLRHIYTGGCESLECMPPDLGQLTSLQTLTFFVVGSSSSCSNVSELENINLVGELELTGLENVTEAQAKAASLGSKEKLTHLL |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g20210 | LOC_Os02g20210.1 | Chr02 | 11902747 | 11904935 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCAGAGATGGTGGTGATCAGGCCGCTGGTCTCCTTGCTGAAGGAGAAGGTGTCGAGCTACCTTGTGGAGCAGTACAAGGTGATGAAAGGCATGGAAGAGCAGCGTGATAGCCTGGCACGCAAGCTTCCGGCCATCCTGGATGTCATTGAAGATGCACAGAAGGGGGCTAGCCGACCAGGAGTATTCAAGTATGAAGCGCTCCGGCGTGATGCCAAGAAAAAGGGGCACTACAACAAGCTCGGTATGGATGTTATAAGCCTCTTCCCTTCTCGTAACCCTATTGTATTCCGTTACAGAATGAGCAAGAAGCTGAGCAAGGTTGTGCGTACCATGGATGTCCTTGTCAGACAGATGAATGACTTTGGATTCACACAAAGGCAGCAAGTGACACCATCGATGCAGTGGCGGCAGACTGATAGCATAATGATTGACTCTGACAAGGACATTGCCAGCAGATCTAGGAACGAGGAGAAGGAGAAGATCATAAAGATATTGGTTGAGCAGGAGGGAAATGGGGGTCTCATGGTTCTTCCTATCGTTGGAATGGGTGGTTTGGGCAAGACTACTTTTGTGCAACTCATTTACAATGAACCTCAAGTCAAGGAGCATTTCAGTCTCCAAAGGTGGTGTTGTGTGTCAGATGATTTCGACATTGGTAACATTGCAAGAAACATCTGCCATAGCCAGGAGAAAAATCATGAGAAAGCTTTGCAGGATCTCCAGAAAGAATTAAGTGGACAGAGATACCTTATTGTGCTGGATGATGTATGGAATCGGGATGCTGACAAGTGGGGAAAACTGTTGACATGCCTTAAGCAAGGTGGCAGGGGCAGTACGATACTGACAACAACTCGTGATGCAGAAGTAGCTCGAGTTATGACCATGGGTGTACCTGGAGCATATAACCTTGAAAAATTGGGTAACAAGTATATGAAGGAAATAATCCAGAGCAGAGCATTCAGAGTGCAAAAGCCAAACAGTGACGAGCTAGATGTAATTGTTGACAAGATTGTGGACAGATGTGTCGGTTCTCCTTTGGCAGCCAAAGCATTTGGCTCTATGTTGAGTACCAAGACTAGCATGCAAGAATGGAAGGATATATTAGTCAAAAGCAACATTTGCAATGAGAAGACAGAGATTTTACCTATACTAAAGCTCAGCTACGATGACCTACCACCACACATGAAGCAATGCTTTGCATTTTGTGCTTTGTTTCCCAAAGATTATCCGATTAATGTGGAGAGATTGATCCAACATTGGATGGCTCATGACTTTATACCTGCACGGGAGGAAGATAACCCTGACATGGTAGGCAAAGAAATTTTTAATGATCTAGCTTGGAGATCATTCTTTCAAGATGTGGAACAAGCCCCTCCACCGACTGGTTATTATGTAAGAAGACCAAAATTCCGTTACATAATGGTGTGCAAGATACATGATCTTATGCATGATGTGGCTCTATCTGTTATGGGGAAAGAATGTGCAACCATAGTCAATATGCCCGACATGAAGTCATTTATAAATCCTACTCGCCACTTGTTCATATCATACCGAGAAATTCACACTCATCTGGATGGTATGCTGAAGAAGCAATCTCCAACACTCCAAACGTTGTTATATACAGATCCCTACACTTATGTCTCTCCACCACGGTTATCAAAGCACAATTCTTTACGGGCAATGCAACTCTGTCGATTGAGAAAACTTCCAATCAGGCCAAGGCACTTGCAATACATTAGGTATCTTAACTTTTCCAACAATTGGTGGATCAAAAAACTTCCTGAAGAAATAAGTTTACTATATAATCTACTGACAATGGACGTTTCTGATTGTGACTCTCTATGCCGGCTTCCAAATGCTATGAAGTATATGAAAAACCTTCGCCATATCTACACTGGTGGATGTGAATCATTGGAATGCATGCCTCCTGACCTTGGACAACTGACTTCTCTACAGACATTAACCTTTTTTGTGGTGGGTTCTAGCTCTAGTTGCAGCAATGTTTCCGAACTCGAAAACATAAATCTTGTCGGAGAATTAGAGTTGACTGGTCTAGAAAATGTAACGGAAGCTCAAGCAAAAGCTGCCAGTCTTGGAAGTAAAGAGAAACTAACGCATTTATTGTAG
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| Protein seq | MAEMVVIRPLVSLLKEKVSSYLVEQYKVMKGMEEQRDSLARKLPAILDVIEDAQKGASRPGVFKYEALRRDAKKKGHYNKLGMDVISLFPSRNPIVFRYRMSKKLSKVVRTMDVLVRQMNDFGFTQRQQVTPSMQWRQTDSIMIDSDKDIASRSRNEEKEKIIKILVEQEGNGGLMVLPIVGMGGLGKTTFVQLIYNEPQVKEHFSLQRWCCVSDDFDIGNIARNICHSQEKNHEKALQDLQKELSGQRYLIVLDDVWNRDADKWGKLLTCLKQGGRGSTILTTTRDAEVARVMTMGVPGAYNLEKLGNKYMKEIIQSRAFRVQKPNSDELDVIVDKIVDRCVGSPLAAKAFGSMLSTKTSMQEWKDILVKSNICNEKTEILPILKLSYDDLPPHMKQCFAFCALFPKDYPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLAWRSFFQDVEQAPPPTGYYVRRPKFRYIMVCKIHDLMHDVALSVMGKECATIVNMPDMKSFINPTRHLFISYREIHTHLDGMLKKQSPTLQTLLYTDPYTYVSPPRLSKHNSLRAMQLCRLRKLPIRPRHLQYIRYLNFSNNWWIKKLPEEISLLYNLLTMDVSDCDSLCRLPNAMKYMKNLRHIYTGGCESLECMPPDLGQLTSLQTLTFFVVGSSSSCSNVSELENINLVGELELTGLENVTEAQAKAASLGSKEKLTHLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.145659 | 0.0 | 0.211669 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0307700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g28100 | SBH | 0.145001 | 0.202615 | 0.663446 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0307700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0013710 | RBH | 0.172106 | 0.0 | 1.284444 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0013880 | RBH | 0.120583 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0013710 | RBH | 0.348044 | 0.000000 | 0.587044 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0013550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0013530 | SBH | 0.663299 | 1.146073 | 3.133639 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0188300 | RBH | 0.8406445 | 3.943347 | 2.9159715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0013320 | SBH | 0.064439 | 0.059218 | 0.180043 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0200400 | RBH | 0.6029485 | 5.382889 | 3.239335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0013890 | SBH | 0.072805 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013430 | SBH | 0.060739 | 0.996012 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0013960 | SBH | 0.000000 | 6.307932 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0013790 | SBH | 0.427795 | 0.149577 | 0.142717 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0013580 | SBH | 0.0 | 0.923521 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G013900 | SBH | 0.217881 | 0.0 | 0.413570 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0013680 | SBH | 0.336856 | 0.0 | 0.512289 |
