Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g12310 | OGI:02018830 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:6404018-6405879 | ||||||||
| Gene Symbol | TMS5, tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30, OsNAC23 | ||||||||||
| DNA seq | CATCACAAAACACATAAAACTATATCATCATCTTCCATAGCTGTACACATCCTATATTTTCATTCATGGCGATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCGCAGCCATGCGTTACTCCCGACATCACCGATATCGACGTTTACAACGTCGACCCGTGGCAGCTTCCAGGTGCTATATATATGCGCACTTTAATTTGCATGAGCCTCACTACATACGGTGCTCTCTACTGGTAGTAGAAATCAATCTAAACCGTTAATCTTATTTGACCGAATGGTTCAGAGATCTATTTATATTATGGTAGTAAAATCGTGGATGGGTGTTATCGTCAGAAAAAAAAATAGGGGTGAAGGGTATAGTCGTCATTTAGCAGTGGCTAAACTCTTTTTTCTCCTTTTTTGGCTTTTTCGATGAAATATGAGCGATGCCAGCGCAATAGATGATCATAGATCAATTTAGCTGAGAAAAAACATAAATGACAAAATAATTTCTAATCATTGTATTAGTAAATTACTAATTTACCTTAATAATACTGATACTAGTAGTATAATACTACCAGTAGAGAGCACCAGAGCGTCGATTTGCATACGAGGCAGGGCGGAGGCAGGCCTAGGACAGGTAGGGCTTAAGCCCTAGGCTTGTTGCCTCCAAAATCATGGTTAAACTCTCTTAAATCATCATTTAAATTTGGGAAAAGAAATGAATAACTAATTAATAACACCCTACCTTTGTCCTACTCTTAGAGTCCGTCACTGCATACGCCGAAGTTCTATTGATAGAGCAGAAAAAAATTACAAAATTATAACCCTGAAATGTCGAAACCAGGAAAAAGGAAAAAATATATATTGATTGTGACCCTGATAGATGCGATACTAATGCAACATATATTGACTGTGTTTGTAGCCATGGCGATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCGGCCCGAGAGGCGCAGGCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACAAAGAAGACGATCTTCGTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGGTTCGTCTTCTACCTCGGCCACCACCAACCATCGGGCAGCAACAACAACAACAAAACATCATGGATCATGCATGAGTACCGTCTCATGAACTCTCCAAGAGCGGCAGTGCCGTCGTCTTCTTCGGTGAATCGTCTTCCCACTGATGATCTCACGGAAGAGATGGTGCTGTGTAGGATCTCCAACAAGGACCTGCCTAAACCACCCTTCATCCACAACAGCTTGTTGCAGTTCTCTTCAGTGGGGTTGAATGGTGATGGGTATAATTACTTGATCCTTGATCACCTTGAGCCTCCAGCAATGGAGTATCCTAATGTTGGCATTGGTAATGTTGATGATGCTGCTGCTGGTACTGATGATCCGGGTGACCTTGATGAGGAGATTGATGATAGCATGCAAAGAAACCATGGTGGCTAGAATTAACCAGTAGCATCATGAGTGAATGGTTTTGCGGGAGATTTGAGTTAAATATCAGATAATAAAATAATAATACAAAGAATAAAAAGAAAAACAAACCTGTATAGTTAGCAGGTTTTGATTCATTTCGTTGAACTTTGTGTGCTTGTTAGCTAGCCTATATACCAAACATGCCTTGGCGAGGCTTTCTATTTGTATATAGCTTTTTTTCTTTTTTCTATTGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTATGCAATTTATGTAACATATTGTCTATAAAGTTCTATTGGCATGC
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| CDS seq | ATGGCGATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCGCAGCCATGCGTTACTCCCGACATCACCGATATCGACGTTTACAACGTCGACCCGTGGCAGCTTCCAGCCATGGCGATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCGGCCCGAGAGGCGCAGGCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACAAAGAAGACGATCTTCGTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGGTTCGTCTTCTACCTCGGCCACCACCAACCATCGGGCAGCAACAACAACAACAAAACATCATGGATCATGCATGAGTACCGTCTCATGAACTCTCCAAGAGCGGCAGTGCCGTCGTCTTCTTCGGTGAATCGTCTTCCCACTGATGATCTCACGGAAGAGATGGTGCTGTGTAGGATCTCCAACAAGGACCTGCCTAAACCACCCTTCATCCACAACAGCTTGTTGCAGTTCTCTTCAGTGGGGTTGAATGGTGATGGGTATAATTACTTGATCCTTGATCACCTTGAGCCTCCAGCAATGGAGTATCCTAATGTTGGCATTGGTAATGTTGATGATGCTGCTGCTGGTACTGATGATCCGGGTGACCTTGATGAGGAGATTGATGATAGCATGCAAAGAAACCATGGTGGCTAG
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| Protein seq | MAMTPQLAFSRMPPGFRFQPTDEQLVVDYLQRRTAAQPCVTPDITDIDVYNVDPWQLPAMAMYGSDHDRYFFTMAAREAQARRTTPSGFWKPTGTKKTIFVVAGGHEVPTAVKRRFVFYLGHHQPSGSNNNNKTSWIMHEYRLMNSPRAAVPSSSSVNRLPTDDLTEEMVLCRISNKDLPKPPFIHNSLLQFSSVGLNGDGYNYLILDHLEPPAMEYPNVGIGNVDDAAAGTDDPGDLDEEIDDSMQRNHGG |
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| Function | NAC domain-containing protein 48 [UniProtKB/Swiss-Prot:Q7F2L3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g12310 | LOC_Os02g12310.1 | Chr02 | 6404018 | 6405879 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCGCAGCCATGCGTTACTCCCGACATCACCGATATCGACGTTTACAACGTCGACCCGTGGCAGCTTCCAGCCATGGCGATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCGGCCCGAGAGGCGCAGGCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACAAAGAAGACGATCTTCGTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGGTTCGTCTTCTACCTCGGCCACCACCAACCATCGGGCAGCAACAACAACAACAAAACATCATGGATCATGCATGAGTACCGTCTCATGAACTCTCCAAGAGCGGCAGTGCCGTCGTCTTCTTCGGTGAATCGTCTTCCCACTGATGATCTCACGGAAGAGATGGTGCTGTGTAGGATCTCCAACAAGGACCTGCCTAAACCACCCTTCATCCACAACAGCTTGTTGCAGTTCTCTTCAGTGGGGTTGAATGGTGATGGGTATAATTACTTGATCCTTGATCACCTTGAGCCTCCAGCAATGGAGTATCCTAATGTTGGCATTGGTAATGTTGATGATGCTGCTGCTGGTACTGATGATCCGGGTGACCTTGATGAGGAGATTGATGATAGCATGCAAAGAAACCATGGTGGCTAG
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| Protein seq | MAMTPQLAFSRMPPGFRFQPTDEQLVVDYLQRRTAAQPCVTPDITDIDVYNVDPWQLPAMAMYGSDHDRYFFTMAAREAQARRTTPSGFWKPTGTKKTIFVVAGGHEVPTAVKRRFVFYLGHHQPSGSNNNNKTSWIMHEYRLMNSPRAAVPSSSSVNRLPTDDLTEEMVLCRISNKDLPKPPFIHNSLLQFSSVGLNGDGYNYLILDHLEPPAMEYPNVGIGNVDDAAAGTDDPGDLDEEIDDSMQRNHGG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.439175 | 5.558930 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0214500 | RBH | 0.063241 | 0.410901 | 21.904547 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0214500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0008750 | RBH | 0.0 | 0.0 | 0.642561 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0008830 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0008620 | RBH | 0.293904 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0008520 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0008650 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0107600 | RBH | 0 | 0 | 0.0353105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0008480 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0111500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0008910 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0008580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0008890 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0008860 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0008630 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G008760 | RBH | 0.0 | 0.0 | 0.643998 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0008680 | RBH | 0.0 | 0.0 | 0.0 |
