Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g58049 | OGI:01064860 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:33578192-33579131 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGAAAAAGAGGTAATTTTTTCTGGGCCTGTATTCTTTTTCTAGGTTCACTAGGATTCTTAGCGGTTGGGGCTTCCAGTTATCTTGGTAAGAATATTATATCTGTACTTCCATCTCAACAAATTCTTTTTTTTCCACAGGGGGTCGTGATGTCTTTCTACGGAATCGCAGGCCTATTCATTAGCGCTTACTTGTGGTGCACTATTTTGTGGAATGTAGGCAGTGGTTATGACCGATTCGATAGAAAAGAGGGAGTAGTGTGCATTTTTCGTTGGGGATTCCCTGGAATAAAACGTCGCGTCTTCCTTCGATTCCTTATGCGGGATATCCAATCAATTAGAATTCAGGTTAAAGAAGGTCTTTTTCCTCGTCGTATCCTTTATATGGAAATCCGGGGCCAGGGGGCCATTCCCTTGACTCGTACTGATGAGAAGTTTTTTACTCCACGAGAAATTGAACAAAAAGCTGCCGAATTGGCTTATTTCTTGCGCATACCAATGGAAGTATTTTGAGTACCAATTGAATTTTTTGAAATGAATTGAATGAAGAAGAATTGGAAGAAGAAAAGTTTTCTCAACACGAGGGAAAAGGTCCCTTCGAAATTGCATTATTGTAAGGGGATTTTGAGTATTTATCTAAAGGAAGGAACAAATGAGGATAAGAGAAAATTGCTTCTAATTTGTCCAAGTGGGATATATGGCGTAATATTCTTCCATTTTCATCCGAAAGGACTTTTTTCTATTTCTCTATTCCACTCCATCTAGATCTAAGAAAGAACTCAATGCAATGAAATTCTACTAGTATAGAAAAAAGAGGAATAGATACAAGGTCTCAAACCTTGTTATAGAATTTTTCCTTCAAAGAAAAAGAAATATCATATAGAGTCAGCGAATAAAGCGGATTCATTAACAACTCAATTTACAGATCAAAAATGAAAAAAAA
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| CDS seq | ATGTCTTTCTACGGAATCGCAGGCCTATTCATTAGCGCTTACTTGTGGTGCACTATTTTGTGGAATGTAGGCAGTGGTTATGACCGATTCGATAGAAAAGAGGGAGTAGTGTGCATTTTTCGTTGGGGATTCCCTGGAATAAAACGTCGCGTCTTCCTTCGATTCCTTATGCGGGATATCCAATCAATTAGAATTCAGGTTAAAGAAGGTCTTTTTCCTCGTCGTATCCTTTATATGGAAATCCGGGGCCAGGGGGCCATTCCCTTGACTCGTACTGATGAGAAGTTTTTTACTCCACGAGAAATTGAACAAAAAGCTGCCGAATTGGCTTATTTCTTGCGCATACCAATGGAAGTATTTTGA |
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| Protein seq | MSFYGIAGLFISAYLWCTILWNVGSGYDRFDRKEGVVCIFRWGFPGIKRRVFLRFLMRDIQSIRIQVKEGLFPRRILYMEIRGQGAIPLTRTDEKFFTPREIEQKAAELAYFLRIPMEVF |
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| Function | Photosystem I assembly protein Ycf4 [UniProtKB/Swiss-Prot:P0C515] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g58049 | LOC_Os01g58049.1 | Chr01 | 33578192 | 33579131 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCTTTCTACGGAATCGCAGGCCTATTCATTAGCGCTTACTTGTGGTGCACTATTTTGTGGAATGTAGGCAGTGGTTATGACCGATTCGATAGAAAAGAGGGAGTAGTGTGCATTTTTCGTTGGGGATTCCCTGGAATAAAACGTCGCGTCTTCCTTCGATTCCTTATGCGGGATATCCAATCAATTAGAATTCAGGTTAAAGAAGGTCTTTTTCCTCGTCGTATCCTTTATATGGAAATCCGGGGCCAGGGGGCCATTCCCTTGACTCGTACTGATGAGAAGTTTTTTACTCCACGAGAAATTGAACAAAAAGCTGCCGAATTGGCTTATTTCTTGCGCATACCAATGGAAGTATTTTGA
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| Protein seq | MSFYGIAGLFISAYLWCTILWNVGSGYDRFDRKEGVVCIFRWGFPGIKRRVFLRFLMRDIQSIRIQVKEGLFPRRILYMEIRGQGAIPLTRTDEKFFTPREIEQKAAELAYFLRIPMEVF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 325.294983 | 283.518188 | 70.022453 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g059879F | SBH | 62.651623 | 58.994762 | 21.888994 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g39744 | RBH | 33.521893 | 36.034168 | 7.116319 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036510 | RBH | 141.773773 | 29.819824 | 170.545547 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0036022 | RBH | 155.969009 | 11.228127 | 236.651505 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036392 | RBH | 609.547729 | 51.310081 | 520.781921 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035790 | RBH | 159.215408 | 2.618303 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0347400 | RBH | 2614.951172 | 277.126984 | 260.906357 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0020310 | RBH | 1476.451904 | 104.557892 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019820 | RBH | 235.040909 | 0.0 | 121.790993 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0020100 | RBH | 263.378326 | 42.602730 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
