Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g56750 | OGI:01098280 | 13/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:32745017-32746482 | ||||||||
| Gene Symbol | OsFbox043, OsFbox43, Os_F0563 | ||||||||||
| DNA seq | ATGGCCGACTTCCCGCCATGGGCGGACCTCACCGACGCCGTCGTGCGCGAGATCGCCAACCGCCTCCCCTGCGTGTACAACCGCGTGCACCTCGCCGGCGTCTGCCGACCATGGCGCGAGCACCTCGAGCGGCTCCCGCCCCTGCTCCCGCCCCCCAAGCTGCCGTATCTCATCCTGCCGCTCGCCGAGCAGCTGGCCTTCTCCTGCGTCCTGAGCGACTGCGCCACCCACCCCTTCTTCGTCCCGGAGTGGATTCGCCACGCTTGCTACTTCGGCTCGTACGACGGCGGCTGGGCCTTCGTCTCCACTGCTCATCCTCGAGCTCAGGGTTATCGAGATTATTTCCTCACCAATCTCCACCAAACCCCGAATACCTTCGTTCTCCCCGTCTGGATCCAGTTGGACCGCGAAGAGCCTGTATTGCGGCCTAGGCAGAAGCGGCTGCGCCCGCGCGACCCGCTGTTCATCAACGCCGCCACCCTCTCGTCGGACCCATTTATGGATGGATGCGTGGTCGCCGGATTCGTCAACAATTGTGCTCCCGTACCGGGCCACCACCGGCAGAAGATTGCGTTCTGGCGAATTGACGATAAGGTGGTCATCGGCTGCTTCTTCATGGAGGACGCGTGCTGGGATGCGGTGGACGTCGTGCGCCACAATGGAGCCTTCCATTTCCTCACCAACGGGCAGCACATCGTCGTGGGCAATCCGGGCTTCGATGACGAAGCGAACGCGCCGCCTCAAGTGCAATGGGAGTATCGCTGCTTCTCGTCGCAGGGGCGCGGCTACGACGGGCAGCACGTCGTGGCGCGCTACCTCGTGGAGTCCAGCGGAGAGCTGCTCATGGTCGTGAGGTGCTCTCCTCGTCCCGGAGAGTCCACGTCGGCGTTCAAGGTGTTCCGGATGGCACAGCCCGAGGAAGACGACGACGGCGACGGCGACGCGCCCTTACTGGATGGCCGGACGATGCTGTTCGTCGGGGATCCCTGCTCCAGATCCGACGGCGACGTGGTTCGATACATCTGGAGGGAGCTGCCCTCGCTGGAGGGCAGGATGCTGTTCGTCGGGCGCGGCTGCTCCAGATCGTACAACACGGATCAGTACCCCGGCTTCGAGGGCGGCGTCTACTTCTTCGATCATCGGATTCCCGGGCAGGGCGGCGGCGCACCGGCGCTTTACCCCTGCAGAGACTGCGGGAAATGGACGGGAAAACCTGCACTCCAGGTGGAGCTCTGCTTCCCGGAGCAAGACCCATCGAACTACTCCTCTCAAGTTTGGTTGCTCAACGGGTAAGCTTGTTTGTGATCCCCGACGTGTGCTTCGTCTCCATTGTCTTTGTTTCTTTTTGCTGAGTTTGGAAGTTTGGATAGTATTGTAGTGCTGAGCTTGTAGTTTCTGATTAGTCTCCAACCATTAGCAGAAGCAGAACACCTTTTTCTAGTATAAATCTCTTGGCTATTGCAGCT
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| CDS seq | ATGGCCGACTTCCCGCCATGGGCGGACCTCACCGACGCCGTCGTGCGCGAGATCGCCAACCGCCTCCCCTGCGTGTACAACCGCGTGCACCTCGCCGGCGTCTGCCGACCATGGCGCGAGCACCTCGAGCGGCTCCCGCCCCTGCTCCCGCCCCCCAAGCTGCCGTATCTCATCCTGCCGCTCGCCGAGCAGCTGGCCTTCTCCTGCGTCCTGAGCGACTGCGCCACCCACCCCTTCTTCGTCCCGGAGTGGATTCGCCACGCTTGCTACTTCGGCTCGTACGACGGCGGCTGGGCCTTCGTCTCCACTGCTCATCCTCGAGCTCAGGGTTATCGAGATTATTTCCTCACCAATCTCCACCAAACCCCGAATACCTTCGTTCTCCCCGTCTGGATCCAGTTGGACCGCGAAGAGCCTGTATTGCGGCCTAGGCAGAAGCGGCTGCGCCCGCGCGACCCGCTGTTCATCAACGCCGCCACCCTCTCGTCGGACCCATTTATGGATGGATGCGTGGTCGCCGGATTCGTCAACAATTGTGCTCCCGTACCGGGCCACCACCGGCAGAAGATTGCGTTCTGGCGAATTGACGATAAGGTGGTCATCGGCTGCTTCTTCATGGAGGACGCGTGCTGGGATGCGGTGGACGTCGTGCGCCACAATGGAGCCTTCCATTTCCTCACCAACGGGCAGCACATCGTCGTGGGCAATCCGGGCTTCGATGACGAAGCGAACGCGCCGCCTCAAGTGCAATGGGAGTATCGCTGCTTCTCGTCGCAGGGGCGCGGCTACGACGGGCAGCACGTCGTGGCGCGCTACCTCGTGGAGTCCAGCGGAGAGCTGCTCATGGTCGTGAGGTGCTCTCCTCGTCCCGGAGAGTCCACGTCGGCGTTCAAGGTGTTCCGGATGGCACAGCCCGAGGAAGACGACGACGGCGACGGCGACGCGCCCTTACTGGATGGCCGGACGATGCTGTTCGTCGGGGATCCCTGCTCCAGATCCGACGGCGACGTGGTTCGATACATCTGGAGGGAGCTGCCCTCGCTGGAGGGCAGGATGCTGTTCGTCGGGCGCGGCTGCTCCAGATCGTACAACACGGATCAGTACCCCGGCTTCGAGGGCGGCGTCTACTTCTTCGATCATCGGATTCCCGGGCAGGGCGGCGGCGCACCGGCGCTTTACCCCTGCAGAGACTGCGGGAAATGGACGGGAAAACCTGCACTCCAGGTGGAGCTCTGCTTCCCGGAGCAAGACCCATCGAACTACTCCTCTCAAGTTTGGTTGCTCAACGGGTAA
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| Protein seq | MADFPPWADLTDAVVREIANRLPCVYNRVHLAGVCRPWREHLERLPPLLPPPKLPYLILPLAEQLAFSCVLSDCATHPFFVPEWIRHACYFGSYDGGWAFVSTAHPRAQGYRDYFLTNLHQTPNTFVLPVWIQLDREEPVLRPRQKRLRPRDPLFINAATLSSDPFMDGCVVAGFVNNCAPVPGHHRQKIAFWRIDDKVVIGCFFMEDACWDAVDVVRHNGAFHFLTNGQHIVVGNPGFDDEANAPPQVQWEYRCFSSQGRGYDGQHVVARYLVESSGELLMVVRCSPRPGESTSAFKVFRMAQPEEDDDGDGDAPLLDGRTMLFVGDPCSRSDGDVVRYIWRELPSLEGRMLFVGRGCSRSYNTDQYPGFEGGVYFFDHRIPGQGGGAPALYPCRDCGKWTGKPALQVELCFPEQDPSNYSSQVWLLNG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g56750 | LOC_Os01g56750.1 | Chr01 | 32745017 | 32746482 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCGACTTCCCGCCATGGGCGGACCTCACCGACGCCGTCGTGCGCGAGATCGCCAACCGCCTCCCCTGCGTGTACAACCGCGTGCACCTCGCCGGCGTCTGCCGACCATGGCGCGAGCACCTCGAGCGGCTCCCGCCCCTGCTCCCGCCCCCCAAGCTGCCGTATCTCATCCTGCCGCTCGCCGAGCAGCTGGCCTTCTCCTGCGTCCTGAGCGACTGCGCCACCCACCCCTTCTTCGTCCCGGAGTGGATTCGCCACGCTTGCTACTTCGGCTCGTACGACGGCGGCTGGGCCTTCGTCTCCACTGCTCATCCTCGAGCTCAGGGTTATCGAGATTATTTCCTCACCAATCTCCACCAAACCCCGAATACCTTCGTTCTCCCCGTCTGGATCCAGTTGGACCGCGAAGAGCCTGTATTGCGGCCTAGGCAGAAGCGGCTGCGCCCGCGCGACCCGCTGTTCATCAACGCCGCCACCCTCTCGTCGGACCCATTTATGGATGGATGCGTGGTCGCCGGATTCGTCAACAATTGTGCTCCCGTACCGGGCCACCACCGGCAGAAGATTGCGTTCTGGCGAATTGACGATAAGGTGGTCATCGGCTGCTTCTTCATGGAGGACGCGTGCTGGGATGCGGTGGACGTCGTGCGCCACAATGGAGCCTTCCATTTCCTCACCAACGGGCAGCACATCGTCGTGGGCAATCCGGGCTTCGATGACGAAGCGAACGCGCCGCCTCAAGTGCAATGGGAGTATCGCTGCTTCTCGTCGCAGGGGCGCGGCTACGACGGGCAGCACGTCGTGGCGCGCTACCTCGTGGAGTCCAGCGGAGAGCTGCTCATGGTCGTGAGGTGCTCTCCTCGTCCCGGAGAGTCCACGTCGGCGTTCAAGGTGTTCCGGATGGCACAGCCCGAGGAAGACGACGACGGCGACGGCGACGCGCCCTTACTGGATGGCCGGACGATGCTGTTCGTCGGGGATCCCTGCTCCAGATCCGACGGCGACGTGGTTCGATACATCTGGAGGGAGCTGCCCTCGCTGGAGGGCAGGATGCTGTTCGTCGGGCGCGGCTGCTCCAGATCGTACAACACGGATCAGTACCCCGGCTTCGAGGGCGGCGTCTACTTCTTCGATCATCGGATTCCCGGGCAGGGCGGCGGCGCACCGGCGCTTTACCCCTGCAGAGACTGCGGGAAATGGACGGGAAAACCTGCACTCCAGGTGGAGCTCTGCTTCCCGGAGCAAGACCCATCGAACTACTCCTCTCAAGTTTGGTTGCTCAACGGGTAA
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| Protein seq | MADFPPWADLTDAVVREIANRLPCVYNRVHLAGVCRPWREHLERLPPLLPPPKLPYLILPLAEQLAFSCVLSDCATHPFFVPEWIRHACYFGSYDGGWAFVSTAHPRAQGYRDYFLTNLHQTPNTFVLPVWIQLDREEPVLRPRQKRLRPRDPLFINAATLSSDPFMDGCVVAGFVNNCAPVPGHHRQKIAFWRIDDKVVIGCFFMEDACWDAVDVVRHNGAFHFLTNGQHIVVGNPGFDDEANAPPQVQWEYRCFSSQGRGYDGQHVVARYLVESSGELLMVVRCSPRPGESTSAFKVFRMAQPEEDDDGDGDAPLLDGRTMLFVGDPCSRSDGDVVRYIWRELPSLEGRMLFVGRGCSRSYNTDQYPGFEGGVYFFDHRIPGQGGGAPALYPCRDCGKWTGKPALQVELCFPEQDPSNYSSQVWLLNG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.104433 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0774400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g56740 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0774400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0035460 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0034970 | RBH | 0.0 | 0.0 | 0.652881 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0035340 | SBH | 0.0 | 0.406390 | 0.159677 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0034740 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0034450 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0541700 | RBH | 0.103445 | 0.1801065 | 0.190303 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0034200 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0538200 | RBH | 0.1059885 | 0.2087935 | 0.7286725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0034340 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0034400 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0034640 | RBH | 0.000000 | 3.660424 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0034720 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0034510 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G034980 | SBH | 0.0 | 0.0 | 0.132602 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0034640 | RBH | 0.0 | 0.0 | 0.000000 |
