Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g56740 | OGI:01122350 | 11/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:32739963-32741600 | ||||||||
| Gene Symbol | OsFbox042, OsFbox42, Os_F0608 | ||||||||||
| DNA seq | CCAGAAGCCAAGAGGAATCAAACCAGCACAAGGGTCTTCTTCTCAACCTCCCCTCCTCTCCCCTCCCCCACCGTCTCTCATGGCCGATTTCCCGCCATGGGCGGACCTCGCCGACGCCGTCGTGCGCGAGATCGCCAACCGCCTCCCCTGCGTGTACGACCGCGTGCACCTCGCCGGCGTCTGCCGACCATGGCGCGAGTCCCTCGAGCGGCTCCCGCCCCTGCACCCGCCTCCCAAGCTGCCGTATCTCATCCTGCCGCTCGCCGAGCAGCCGGCCTTCTCCTGCGTCCTGAGCGGCGGCGCCACCCACCCCTTCTTCGTCCCGGAGCGGATTCGCCACGCTTGCTACTTCGGCTCGTACGACGGCGGCTGGGCCTTCCTCTCCACTCTTCATCCTCAAGCTAATCGAGTGTACTTCCTCGCCAATCTGGCCGGCACCTCGGGCACCTTCAATCTCCCCAACAGGATCCAGTTGGAACGCGAAGCGCTTGAATTGGCGCCTGAGGAGAAGCCGCTGCTGCATCGGTTGGTCATCTACACCGCCACCCTCTCGTCGGACCCATTTATGGATGGATGCGTGGTCGCCGGACTCATCAACGATCAAGCTCCCATACCCGGCTACCGCCGCCAGAAGATTGCGTTCTGGCAAATTGAAGATAGGGTGGTCGTCGGCTACTTCTACATGGGTGAAGCGTGCTGGGATGCGGTGGACGTCGTGCGCCACAATGGAGCCTTCCATTTCCTCACCAAGGGGGAGGACATCATCGTGGGCAATCCGGTCTTCGCTGAAGCGGGTGCGCCGCCCCAAGTGCAATGGGAGTATCGCTGCTTCTCGTCGCAGGGGCGCGGCTACGACGGGCAGCACGTCGTGGCGCGCTACCTCGTGGAGTCCAGCGGAGAACTGCTCATGGTCGTGAGGTGCTCTCCTCGTCCTGGAGAGTTCACGTCAGCGTTCAAGGTGTTCCGAATGGCACAACCCGAGGAAGACGACGACGCACCCTCACTGGATGGCCGGACGATGCTGTTCGTCGGGCGTCCCTGCTCCAGATCTGACGGCGATGTGGTTCGGTACATCTGGAGGGAGCTGCCCTCGCTGGAAGGCCGGATGCTGTTCGTCGGGCGCGGCTGCTCCAGATCCTACGACGCGGATCAGTACCCTGGCTTCGAGGGCGGCATCTACTTCTTCGATCATCGGATCGCCGGGCAGCTCGGCGACGCGCCGGCGCAGTACCCCTGCAGCGACTGCGGGAAATGGACGGGAAAACCTGCACTCCAGGTGGACCGCTTCTTCCCGGAGCAAGACCCATCGAACTACACCTCTCAAGTTTGGTTGCTCAACGGGTAAGCTAGTTTTTGATCTGTCTAACAGGTGCTTCGTCTGCATTGTCTTTGTTTCTTTTTGCTGAGTTTGGAAGTTTGGATGGTATTGTAGTGCTGAGATTGTAGTTTCTGATCAGTCTCCAACTGTTAGAAGAAGCAGAACACCTTTTTCTAGTAGAAATCTCTTTGCTATTGCAGCTATGATCAATACACCGTTTGATAATTTCTGCTTCCCACTTAATTGCATGATTCAATCATTAGTATATTCCTGTTGCAACTGATTTTCAGTGCGGACATGTGCGTATGGTTGTGCTTATA
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| CDS seq | ATGGCCGATTTCCCGCCATGGGCGGACCTCGCCGACGCCGTCGTGCGCGAGATCGCCAACCGCCTCCCCTGCGTGTACGACCGCGTGCACCTCGCCGGCGTCTGCCGACCATGGCGCGAGTCCCTCGAGCGGCTCCCGCCCCTGCACCCGCCTCCCAAGCTGCCGTATCTCATCCTGCCGCTCGCCGAGCAGCCGGCCTTCTCCTGCGTCCTGAGCGGCGGCGCCACCCACCCCTTCTTCGTCCCGGAGCGGATTCGCCACGCTTGCTACTTCGGCTCGTACGACGGCGGCTGGGCCTTCCTCTCCACTCTTCATCCTCAAGCTAATCGAGTGTACTTCCTCGCCAATCTGGCCGGCACCTCGGGCACCTTCAATCTCCCCAACAGGATCCAGTTGGAACGCGAAGCGCTTGAATTGGCGCCTGAGGAGAAGCCGCTGCTGCATCGGTTGGTCATCTACACCGCCACCCTCTCGTCGGACCCATTTATGGATGGATGCGTGGTCGCCGGACTCATCAACGATCAAGCTCCCATACCCGGCTACCGCCGCCAGAAGATTGCGTTCTGGCAAATTGAAGATAGGGTGGTCGTCGGCTACTTCTACATGGGTGAAGCGTGCTGGGATGCGGTGGACGTCGTGCGCCACAATGGAGCCTTCCATTTCCTCACCAAGGGGGAGGACATCATCGTGGGCAATCCGGTCTTCGCTGAAGCGGGTGCGCCGCCCCAAGTGCAATGGGAGTATCGCTGCTTCTCGTCGCAGGGGCGCGGCTACGACGGGCAGCACGTCGTGGCGCGCTACCTCGTGGAGTCCAGCGGAGAACTGCTCATGGTCGTGAGGTGCTCTCCTCGTCCTGGAGAGTTCACGTCAGCGTTCAAGGTGTTCCGAATGGCACAACCCGAGGAAGACGACGACGCACCCTCACTGGATGGCCGGACGATGCTGTTCGTCGGGCGTCCCTGCTCCAGATCTGACGGCGATGTGGTTCGGTACATCTGGAGGGAGCTGCCCTCGCTGGAAGGCCGGATGCTGTTCGTCGGGCGCGGCTGCTCCAGATCCTACGACGCGGATCAGTACCCTGGCTTCGAGGGCGGCATCTACTTCTTCGATCATCGGATCGCCGGGCAGCTCGGCGACGCGCCGGCGCAGTACCCCTGCAGCGACTGCGGGAAATGGACGGGAAAACCTGCACTCCAGGTGGACCGCTTCTTCCCGGAGCAAGACCCATCGAACTACACCTCTCAAGTTTGGTTGCTCAACGGGTAA
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| Protein seq | MADFPPWADLADAVVREIANRLPCVYDRVHLAGVCRPWRESLERLPPLHPPPKLPYLILPLAEQPAFSCVLSGGATHPFFVPERIRHACYFGSYDGGWAFLSTLHPQANRVYFLANLAGTSGTFNLPNRIQLEREALELAPEEKPLLHRLVIYTATLSSDPFMDGCVVAGLINDQAPIPGYRRQKIAFWQIEDRVVVGYFYMGEACWDAVDVVRHNGAFHFLTKGEDIIVGNPVFAEAGAPPQVQWEYRCFSSQGRGYDGQHVVARYLVESSGELLMVVRCSPRPGEFTSAFKVFRMAQPEEDDDAPSLDGRTMLFVGRPCSRSDGDVVRYIWRELPSLEGRMLFVGRGCSRSYDADQYPGFEGGIYFFDHRIAGQLGDAPAQYPCSDCGKWTGKPALQVDRFFPEQDPSNYTSQVWLLNG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g56740 | LOC_Os01g56740.1 | Chr01 | 32739963 | 32741600 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCGATTTCCCGCCATGGGCGGACCTCGCCGACGCCGTCGTGCGCGAGATCGCCAACCGCCTCCCCTGCGTGTACGACCGCGTGCACCTCGCCGGCGTCTGCCGACCATGGCGCGAGTCCCTCGAGCGGCTCCCGCCCCTGCACCCGCCTCCCAAGCTGCCGTATCTCATCCTGCCGCTCGCCGAGCAGCCGGCCTTCTCCTGCGTCCTGAGCGGCGGCGCCACCCACCCCTTCTTCGTCCCGGAGCGGATTCGCCACGCTTGCTACTTCGGCTCGTACGACGGCGGCTGGGCCTTCCTCTCCACTCTTCATCCTCAAGCTAATCGAGTGTACTTCCTCGCCAATCTGGCCGGCACCTCGGGCACCTTCAATCTCCCCAACAGGATCCAGTTGGAACGCGAAGCGCTTGAATTGGCGCCTGAGGAGAAGCCGCTGCTGCATCGGTTGGTCATCTACACCGCCACCCTCTCGTCGGACCCATTTATGGATGGATGCGTGGTCGCCGGACTCATCAACGATCAAGCTCCCATACCCGGCTACCGCCGCCAGAAGATTGCGTTCTGGCAAATTGAAGATAGGGTGGTCGTCGGCTACTTCTACATGGGTGAAGCGTGCTGGGATGCGGTGGACGTCGTGCGCCACAATGGAGCCTTCCATTTCCTCACCAAGGGGGAGGACATCATCGTGGGCAATCCGGTCTTCGCTGAAGCGGGTGCGCCGCCCCAAGTGCAATGGGAGTATCGCTGCTTCTCGTCGCAGGGGCGCGGCTACGACGGGCAGCACGTCGTGGCGCGCTACCTCGTGGAGTCCAGCGGAGAACTGCTCATGGTCGTGAGGTGCTCTCCTCGTCCTGGAGAGTTCACGTCAGCGTTCAAGGTGTTCCGAATGGCACAACCCGAGGAAGACGACGACGCACCCTCACTGGATGGCCGGACGATGCTGTTCGTCGGGCGTCCCTGCTCCAGATCTGACGGCGATGTGGTTCGGTACATCTGGAGGGAGCTGCCCTCGCTGGAAGGCCGGATGCTGTTCGTCGGGCGCGGCTGCTCCAGATCCTACGACGCGGATCAGTACCCTGGCTTCGAGGGCGGCATCTACTTCTTCGATCATCGGATCGCCGGGCAGCTCGGCGACGCGCCGGCGCAGTACCCCTGCAGCGACTGCGGGAAATGGACGGGAAAACCTGCACTCCAGGTGGACCGCTTCTTCCCGGAGCAAGACCCATCGAACTACACCTCTCAAGTTTGGTTGCTCAACGGGTAA
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| Protein seq | MADFPPWADLADAVVREIANRLPCVYDRVHLAGVCRPWRESLERLPPLHPPPKLPYLILPLAEQPAFSCVLSGGATHPFFVPERIRHACYFGSYDGGWAFLSTLHPQANRVYFLANLAGTSGTFNLPNRIQLEREALELAPEEKPLLHRLVIYTATLSSDPFMDGCVVAGLINDQAPIPGYRRQKIAFWQIEDRVVVGYFYMGEACWDAVDVVRHNGAFHFLTKGEDIIVGNPVFAEAGAPPQVQWEYRCFSSQGRGYDGQHVVARYLVESSGELLMVVRCSPRPGEFTSAFKVFRMAQPEEDDDAPSLDGRTMLFVGRPCSRSDGDVVRYIWRELPSLEGRMLFVGRGCSRSYDADQYPGFEGGIYFFDHRIAGQLGDAPAQYPCSDCGKWTGKPALQVDRFFPEQDPSNYTSQVWLLNG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0774400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g56750 | RBH | 0.0 | 0.0 | 0.104433 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0774400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0035450 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0034960 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0035340 | SBH | 0.0 | 0.406390 | 0.159677 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0034730 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0034440 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0541700 | SBH | 0.103445 | 0.1801065 | 0.190303 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0034190 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0538100 | RBH | 0 | 0 | 0.015061 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0034340 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0034400 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0034630 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0034710 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0034510 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G034980 | RBH | 0.0 | 0.0 | 0.132602 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0034640 | SBH | 0.0 | 0.0 | 0.000000 |
