Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g52200 | OGI:01090590 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:30017781-30019979 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGACATGGTAGCCTGTGAAAGTAAATCCTCTACCAACGACTTCACCACCAGCAAACCATGCTATCAACTCAATACCAAACAATGTTGCAACGCCAATATCCTCGGCCTTTAGATTTAGATTCTTCCTGTTTTTCCACAAGAGCTTTGCGCCATCAACCTCTTTCCAGAACGACTCGTAACGGCCAGGGATGCTGCAAGATCGAAACATCAACTTGTTAGTATCTCATCGGTGTACGATGGCTGATAAACCATGAAAAAACATAAACAAAGTAAACAAAAATAATTTGTAAGTAGAATTTTTTTTATATTTGTGTTCTTAACGATTTAAAAATCAATAGTGAAAATAAAATACGATGAAAAATACCTCAAAAATCGATTAAATTACGTTTCAAAATTTAAATTTTAGTTGCGGCTAATAAGCCAACAAACAAATTTAGTAAGTGGTGATATTTAACTTTTCCAAAGAAATACATTATGTTCAACTTTTTTTTTGTTGTGGTTGAGTTCATCTTCGGCCGACAGCGTAACACTTCCATCATCTAAAGAAGTTTATTATTGTACAAAAAAAGTAAGCTCACATAAAACCGATGTTTTCAAAGAAGAAATAAACGAAGTCCTTGCACAAGCCCCATACCGAACTAGAAAAGATTGCGCAGAGAGATTGAAACCATCAGCTACCTTTCCTAAACATGATCGAATACAGAGTTCCTTCTCAACAAGTAAGGCATGAATACAAACTCGTATGTAAATTAAGAAAATAGCATTCAACATCTATGATTTACTCTCTCCGACCCTCAGAAAGTTTATTACTCCCTCCGTATTTTAATGTATGACGCCGTTGACTTTTTAATCAACGTTTGACCATTCGTCTTATTCAAAATTTTTATGCAAATATAAAAATACTTATGCCATGCTTAAATAACATTTGATGATAAATCAAATCATAATAAAATAAATTATAATTACATAATTTTTTTGAATAAGACGAAATGTCAAACGTTTGTTAAAAAGTCAACGGCATTATACATTAAAATACGGAGGGAGTATTAGCAGTCAAATATTTAGTAGATGTGAAAAGACGAATATGACATCCATCTTCTCCCTAGGCTAGCTTGTACATTCGACTATACTTTTGGCATGTCCAACCTCTCTAACGCCGAGTTTAGTTCCAAACTTTTTTTTTCAAACTTCCAACTTTTCCATCACATCAAAATTTTTCTACATACATAAACTTCCAACTTTTCCGTCACATCGTTTCAATTTCAACCAAACTTTCAATTTTAGCGTGAACTAAACATACCCTAATTAATAACGTTTGCACCTGAAGATTGGAGATGCATTGGCAATCTACAACTAAAAATATATATAAAAAAAGGACTGAAGAACCCCACATCTAAAAATAATAAGCTCTTCATGAGCAAATACTTCAGTGTTAGGACGGAGGGAGAAAAACATGGTGGTGGTCTTGGCGCGACAATAATTCTCATAATAATGAATTGAGATTCTCTTTTCACAATCCTTCAAAAAGCATAGGGCCGGTATCATAAAACAGTACAAACCTTTTGTATCTTTCTGTAAAACCACTCAATATTAAAGTTTAATCAAATGTCTTCAGACTTAAGATTAAAACTACTCTAATATTTGTTATCAAATTTTTAGTGTCAAGAACCGTAAAACCAATCTACTTTTCAATTATAAATCCTTAGTAGTAGGTTTCGGTTGTAACTATACAATCTGTAATCGCACCAATTAATTAATTAATATGTTCATCTACCAAAAAAAAGTTCAGTTGGCATCAAAGAAGCTAATCAACGTACGTCAATGGAGCGCAAAAGAAAAAAAAGATCGATCGAGCTAACCAAAATCAATCAAAATCAATGCTGATCGATCTATCACTCTATAGGGATTAGGGAGGGGACCTGGCGAGGCGGGTGTAGAAGAGCTGCTTGGAGAGCTCCTGGCACGTCTGGATGGTGGGCGGGTCGATGACGTAGCGCTTGTTCCGCTCCATGAGCTCCTCGTGGAACGCGCGCCCGTGCTTGGCCGCGCTCCTCGTCGCCTCGCACGCCCTCGACTGCAGCTGCCTGCTCCCCTCCACCACCGCCTTGTTGTACGCGCACCCCTGCCTCGCCGCCACCCTCGCCGCCTCCCGCGCCGCCGACCCCAGCGTCGCCAGCTTCGACCCCAGCGCCGCCAT
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| CDS seq | ATGGCGGCGCTGGGGTCGAAGCTGGCGACGCTGGGGTCGGCGGCGCGGGAGGCGGCGAGGGTGGCGGCGAGGCAGGGGTGCGCGTACAACAAGGCGGTGGTGGAGGGGAGCAGGCAGCTGCAGTCGAGGGCGTGCGAGGCGACGAGGAGCGCGGCCAAGCACGGGCGCGCGTTCCACGAGGAGCTCATGGAGCGGAACAAGCGCTACGTCATCGACCCGCCCACCATCCAGACGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGCATCCCTGGCCGTTACGAGTCGTTCTGGAAAGAGGTTGATGGCGCAAAGCTCTTGTGGAAAAACAGGAAGAATCTAAATCTAAAGGCCGAGGATATTGGCGTTGCAACATTGTTTGGTATTGAGTTGATAGCATGGTTTGCTGGTGGTGAAGTCGTTGGTAGAGGATTTACTTTCACAGGCTACCATGTCTAA
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| Protein seq | MAALGSKLATLGSAAREAARVAARQGCAYNKAVVEGSRQLQSRACEATRSAAKHGRAFHEELMERNKRYVIDPPTIQTCQELSKQLFYTRLASIPGRYESFWKEVDGAKLLWKNRKNLNLKAEDIGVATLFGIELIAWFAGGEVVGRGFTFTGYHV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g52200 | LOC_Os01g52200.1 | Chr01 | 30017781 | 30019979 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCGCTGGGGTCGAAGCTGGCGACGCTGGGGTCGGCGGCGCGGGAGGCGGCGAGGGTGGCGGCGAGGCAGGGGTGCGCGTACAACAAGGCGGTGGTGGAGGGGAGCAGGCAGCTGCAGTCGAGGGCGTGCGAGGCGACGAGGAGCGCGGCCAAGCACGGGCGCGCGTTCCACGAGGAGCTCATGGAGCGGAACAAGCGCTACGTCATCGACCCGCCCACCATCCAGACGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGCATCCCTGGCCGTTACGAGTCGTTCTGGAAAGAGGTTGATGGCGCAAAGCTCTTGTGGAAAAACAGGAAGAATCTAAATCTAAAGGCCGAGGATATTGGCGTTGCAACATTGTTTGGTATTGAGTTGATAGCATGGTTTGCTGGTGGTGAAGTCGTTGGTAGAGGATTTACTTTCACAGGCTACCATGTCTAA
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| Protein seq | MAALGSKLATLGSAAREAARVAARQGCAYNKAVVEGSRQLQSRACEATRSAAKHGRAFHEELMERNKRYVIDPPTIQTCQELSKQLFYTRLASIPGRYESFWKEVDGAKLLWKNRKNLNLKAEDIGVATLFGIELIAWFAGGEVVGRGFTFTGYHV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0600000 | SBH | 4.810289 | 8.798863 | 29.503340 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g45740 | RBH | 0.0 | 0.000000 | 2.544164 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0600000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0031800 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0031380 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0031820 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0031040 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0030710 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0497900 | SBH | 0 | 0 | 0.916338 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0030440 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0491100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0030690 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0030630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0030930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0031090 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0030860 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G031320 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0030970 | RBH | 0.0 | 0.0 | 0.0 |
