Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g41250 | OGI:01072780 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:23347750-23349394 | ||||||||
| Gene Symbol | OsRALyase1, OsFbox021, OsFbox21, Os_F0117 | ||||||||||
| DNA seq | ATGGACGAAACCCTCGCCGCCGTCCTCTCCTACCTCCCGCCTCCCACCTTCTCCACCGCGAACTCTCACCCTTCTTCTCCCTCCGCCGCCGACGCGGCCGCCGTCTTCTCGCTGGACGAAGAGGACCGCATCAGCCGGCTCCCCGACGCGCTCCTCCGCAGGGTCGTCTCGCGCCTCCCCACCAAGGACGCCGCCCGCACCGCCGCGATCTCCTCCCGCTGGCGCCGCGTCTGGGCCTCCATCCCTCTCCACCTCGACGACGGCGGCCTCGCTCCGGGCGACGTCACCGCGGCGCTCGCCGCCCACCCGGGCCCAGTCGCCTCGGCGCGCCTCGCCTCCGCGCACCTGGCAACCGTGGATCCCGACGTCGTCGCGTCCTGGTTCGCCTCCCTCGCCGCCAAGGAGGTCGGTGAACTCGCCGTCGTGAACGGATCATGGCCCATCGAGTGGCGTCCCCCACCCGATCTCCTCGGCTGCGCCTCCCTCCGCCGCCTCTGGCTCGGCCTCTGCCAGTTCCCGGACACAGCCGGCCTCCCTCCAGCCTTCGCCAACCTGCAGGAGATCGTTGTTGTCCACTCCTCCATGCAGGACCGCGAGCTTCACGCCGTGCTCCCCCGCTGCCCCGAGCTCGAGAGCCTCGCGCTCGTGCTTACACAGGACTACCCAAGATACGTCCATATCTGGTCGGGGAGCCTCCGGTGCGTGGTGCTATGGATGTCCATGGTCAGAGAGGTGCACCTCGATGATGCCCCCAACATGGAGCGGCTGCTTCTGGAGCCGATCGCCGGAGCATCCACGCACGTCAAGATCATCAATGCGCCAAGGCTAAAGGTTCTTGGGTACTTCGATGTCGGTCTGCACCAGCTCAAGATCGGTTCTACTGTCATCAAGGTTGCTGGCTGTTTCTTGTGGCAGCTCCTTGCTGTTTTTCACAATTATGTGAAATTGCATTTGTGTAACTGCTTTTTTTTGTGTCGTAGGATGGGATAAAGGTGAAGCCAAGTGCAATGGTTCGGACCCTCAGGACATTGGCGTTGAAGGTGCAGTTTGGTGTCGAGGAGCAAGTGAAACTGGTGCCCCTGTTGCTTAGATGCTTCCCATGCTTAGAAACATTGTATATCATGGTACTAATCTTAAGCCACTGCATTATTCACTTTGTAATATGTGTGTGCTCCTGTTGACTGAATCATCTTGTTTGCCTGAAATACAGTCAGTTCCTTCTGAGACACCAGTTAATGTTGGAGTGGAGTTCTGGGATCTAGTAGGCTACACGGAATGTGTCCATTCACATCTGAGGAAGTTTGTGTTTCAAGCTGCTCGAGGCAAAGACAGTGAGCTGGCATTTGTAAAGTTTGTAATGGGAAGAGCCCAAATGTTGGAGCAGATGCTTATTTTTGTGGATGATGGTTCCTCTAGAGTTGTCGTGCTGAGTCATTTGTCTTCAGAAGGGTGTGTGTCTGCAGATGCTACAGTGGTTGTGGAGAGTCATGACAAGTCTTATCCTTGGAATTTCCATAGAGCCAGCAACATGTTGCAGAGTGACCCATTTGCTTGCTCGTCTTGCTGCCGAAGCTGTTGTGGCTGCGGCAGTTGTAATCAATAAACACTTCATTTCTGCTGAAGTCAATCTTGGTTACATTTATAA
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| CDS seq | ATGGACGAAACCCTCGCCGCCGTCCTCTCCTACCTCCCGCCTCCCACCTTCTCCACCGCGAACTCTCACCCTTCTTCTCCCTCCGCCGCCGACGCGGCCGCCGTCTTCTCGCTGGACGAAGAGGACCGCATCAGCCGGCTCCCCGACGCGCTCCTCCGCAGGGTCGTCTCGCGCCTCCCCACCAAGGACGCCGCCCGCACCGCCGCGATCTCCTCCCGCTGGCGCCGCGTCTGGGCCTCCATCCCTCTCCACCTCGACGACGGCGGCCTCGCTCCGGGCGACGTCACCGCGGCGCTCGCCGCCCACCCGGGCCCAGTCGCCTCGGCGCGCCTCGCCTCCGCGCACCTGGCAACCGTGGATCCCGACGTCGTCGCGTCCTGGTTCGCCTCCCTCGCCGCCAAGGAGGTCGGTGAACTCGCCGTCGTGAACGGATCATGGCCCATCGAGTGGCGTCCCCCACCCGATCTCCTCGGCTGCGCCTCCCTCCGCCGCCTCTGGCTCGGCCTCTGCCAGTTCCCGGACACAGCCGGCCTCCCTCCAGCCTTCGCCAACCTGCAGGAGATCGTTGTTGTCCACTCCTCCATGCAGGACCGCGAGCTTCACGCCGTGCTCCCCCGCTGCCCCGAGCTCGAGAGCCTCGCGCTCGTGCTTACACAGGACTACCCAAGATACGTCCATATCTGGTCGGGGAGCCTCCGGTGCGTGGTGCTATGGATGTCCATGGTCAGAGAGGTGCACCTCGATGATGCCCCCAACATGGAGCGGCTGCTTCTGGAGCCGATCGCCGGAGCATCCACGCACGTCAAGATCATCAATGCGCCAAGGCTAAAGGTTCTTGGGTACTTCGATGTCGGTCTGCACCAGCTCAAGATCGGTTCTACTGTCATCAAGGATGGGATAAAGGTGAAGCCAAGTGCAATGGTTCGGACCCTCAGGACATTGGCGTTGAAGGTGCAGTTTGGTGTCGAGGAGCAAGTGAAACTGGTGCCCCTGTTGCTTAGATGCTTCCCATGCTTAGAAACATTGTATATCATGTCAGTTCCTTCTGAGACACCAGTTAATGTTGGAGTGGAGTTCTGGGATCTAGTAGGCTACACGGAATGTGTCCATTCACATCTGAGGAAGTTTGTGTTTCAAGCTGCTCGAGGCAAAGACAGTGAGCTGGCATTTGTAAAGTTTGTAATGGGAAGAGCCCAAATGTTGGAGCAGATGCTTATTTTTGTGGATGATGGTTCCTCTAGAGTTGTCGTGCTGAGTCATTTGTCTTCAGAAGGGTGTGTGTCTGCAGATGCTACAGTGGTTGTGGAGAGTCATGACAAGTCTTATCCTTGGAATTTCCATAGAGCCAGCAACATGTTGCAGAGTGACCCATTTGCTTGCTCGTCTTGCTGCCGAAGCTGTTGTGGCTGCGGCAGTTGTAATCAATAA
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| Protein seq | MDETLAAVLSYLPPPTFSTANSHPSSPSAADAAAVFSLDEEDRISRLPDALLRRVVSRLPTKDAARTAAISSRWRRVWASIPLHLDDGGLAPGDVTAALAAHPGPVASARLASAHLATVDPDVVASWFASLAAKEVGELAVVNGSWPIEWRPPPDLLGCASLRRLWLGLCQFPDTAGLPPAFANLQEIVVVHSSMQDRELHAVLPRCPELESLALVLTQDYPRYVHIWSGSLRCVVLWMSMVREVHLDDAPNMERLLLEPIAGASTHVKIINAPRLKVLGYFDVGLHQLKIGSTVIKDGIKVKPSAMVRTLRTLALKVQFGVEEQVKLVPLLLRCFPCLETLYIMSVPSETPVNVGVEFWDLVGYTECVHSHLRKFVFQAARGKDSELAFVKFVMGRAQMLEQMLIFVDDGSSRVVVLSHLSSEGCVSADATVVVESHDKSYPWNFHRASNMLQSDPFACSSCCRSCCGCGSCNQ |
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| Function | F-box/FBD/LRR-repeat protein At1g13570 [UniProtKB/Swiss-Prot:Q9FZ70] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g41250 | LOC_Os01g41250.1 | Chr01 | 23347750 | 23349394 | + | MSU_osa1r7 | ||
| CDS seq | ATGGACGAAACCCTCGCCGCCGTCCTCTCCTACCTCCCGCCTCCCACCTTCTCCACCGCGAACTCTCACCCTTCTTCTCCCTCCGCCGCCGACGCGGCCGCCGTCTTCTCGCTGGACGAAGAGGACCGCATCAGCCGGCTCCCCGACGCGCTCCTCCGCAGGGTCGTCTCGCGCCTCCCCACCAAGGACGCCGCCCGCACCGCCGCGATCTCCTCCCGCTGGCGCCGCGTCTGGGCCTCCATCCCTCTCCACCTCGACGACGGCGGCCTCGCTCCGGGCGACGTCACCGCGGCGCTCGCCGCCCACCCGGGCCCAGTCGCCTCGGCGCGCCTCGCCTCCGCGCACCTGGCAACCGTGGATCCCGACGTCGTCGCGTCCTGGTTCGCCTCCCTCGCCGCCAAGGAGGTCGGTGAACTCGCCGTCGTGAACGGATCATGGCCCATCGAGTGGCGTCCCCCACCCGATCTCCTCGGCTGCGCCTCCCTCCGCCGCCTCTGGCTCGGCCTCTGCCAGTTCCCGGACACAGCCGGCCTCCCTCCAGCCTTCGCCAACCTGCAGGAGATCGTTGTTGTCCACTCCTCCATGCAGGACCGCGAGCTTCACGCCGTGCTCCCCCGCTGCCCCGAGCTCGAGAGCCTCGCGCTCGTGCTTACACAGGACTACCCAAGATACGTCCATATCTGGTCGGGGAGCCTCCGGTGCGTGGTGCTATGGATGTCCATGGTCAGAGAGGTGCACCTCGATGATGCCCCCAACATGGAGCGGCTGCTTCTGGAGCCGATCGCCGGAGCATCCACGCACGTCAAGATCATCAATGCGCCAAGGCTAAAGGTTCTTGGGTACTTCGATGTCGGTCTGCACCAGCTCAAGATCGGTTCTACTGTCATCAAGGATGGGATAAAGGTGAAGCCAAGTGCAATGGTTCGGACCCTCAGGACATTGGCGTTGAAGGTGCAGTTTGGTGTCGAGGAGCAAGTGAAACTGGTGCCCCTGTTGCTTAGATGCTTCCCATGCTTAGAAACATTGTATATCATGTCAGTTCCTTCTGAGACACCAGTTAATGTTGGAGTGGAGTTCTGGGATCTAGTAGGCTACACGGAATGTGTCCATTCACATCTGAGGAAGTTTGTGTTTCAAGCTGCTCGAGGCAAAGACAGTGAGCTGGCATTTGTAAAGTTTGTAATGGGAAGAGCCCAAATGTTGGAGCAGATGCTTATTTTTGTGGATGATGGTTCCTCTAGAGTTGTCGTGCTGAGTCATTTGTCTTCAGAAGGGTGTGTGTCTGCAGATGCTACAGTGGTTGTGGAGAGTCATGACAAGTCTTATCCTTGGAATTTCCATAGAGCCAGCAACATGTTGCAGAGTGACCCATTTGCTTGCTCGTCTTGCTGCCGAAGCTGTTGTGGCTGCGGCAGTTGTAATCAATAA
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| Protein seq | MDETLAAVLSYLPPPTFSTANSHPSSPSAADAAAVFSLDEEDRISRLPDALLRRVVSRLPTKDAARTAAISSRWRRVWASIPLHLDDGGLAPGDVTAALAAHPGPVASARLASAHLATVDPDVVASWFASLAAKEVGELAVVNGSWPIEWRPPPDLLGCASLRRLWLGLCQFPDTAGLPPAFANLQEIVVVHSSMQDRELHAVLPRCPELESLALVLTQDYPRYVHIWSGSLRCVVLWMSMVREVHLDDAPNMERLLLEPIAGASTHVKIINAPRLKVLGYFDVGLHQLKIGSTVIKDGIKVKPSAMVRTLRTLALKVQFGVEEQVKLVPLLLRCFPCLETLYIMSVPSETPVNVGVEFWDLVGYTECVHSHLRKFVFQAARGKDSELAFVKFVMGRAQMLEQMLIFVDDGSSRVVVLSHLSSEGCVSADATVVVESHDKSYPWNFHRASNMLQSDPFACSSCCRSCCGCGSCNQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.205874 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0595900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0595900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0023980 | SBH | 0.0 | 0.0 | 0.465401 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0030390 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0023890 | SBH | 0.0 | 0.0 | 0.755388 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023240 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0029700 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0391000 | RBH | 1.023772 | 4.382909 | 5.154593 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022920 | SBH | 0.0 | 0.0 | 0.140610 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0379500 | RBH | 0.633127 | 3.102941 | 5.3303245 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0022900 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0029630 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0029900 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023110 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029850 | SBH | 0.0 | 1.580926 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G030310 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022910 | SBH | 0.0 | 0.0 | 0.000000 |
