Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| TMG0411812300.01 | OGI:04094095 | 10/50 | Os XI-2: TM | TM | SICAU | Chr04:27029306-27030187 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | Lemont_TM_INS0445150,Y58S_TM_INS0445060,Y58S_TM_INS0445430,NamRoo_TM_INS0447800,J4155S_TM_INS0453260,125827_TM_DEL0436430,J4155_TM_INS0449390,Kosh_TM_INS0451990,ZH11_TM_INS0448240,132278_TM_INS0445730,Azucena_TM_INS0441600,LJ_TM_INS0441920_1,Nipponbare_TM_INS0448190,02428_TM_INS0449040,KY131_TM_INS0450370,128077_TM_TRA0401590,128077_TM_INS0439510,127652_TM_DEL0448500,127652_TM_DEL0454150,DHX2_TM_INS0450060,117425_TM_INS0442430,132424_TM_DEL0444690,125619_TM_INS0439490,125619_TM_INS0440270,Basmati1_TM_INS0442500,Basmati1_TM_DEL0451320,
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| DNA seq | GTTCCGTCGTGGCGCCTAGTGGGAAAATTATCTCTTAAAAACCCTAATTGCGAAATTTGTTTCTTTGCTTGTTGTCTAGTGTCCATGCCATCTGAAGATCTCAAATCCCCGATATATCGTCGAGTTCAATTCCGAATCTAAATCCTTCCAAATCAAATCCCTCCGCAAAAGTCTATTTTGCCTCCCCCGGGGTCGATGGGCCGAATCTCTTTCGGCCCATCTCCCCCTCCCTCCCGGCGCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTTCCCCTCGCTCTGCCCGCGCGTGCGCGAGCGCCGCGCCGAGCGCCCCCTCCCCCTCGCTCTCCTTCTCCCCATCCCTGGCGAGCTCCCCGCCCGCGAAGCCGGCCCCCGCGCGCCGTTGTTCGCGCGCGCGCCCGCGTGGTTGCCACCCGTGCCGCGCCGCCTGCGCCGTCCGCGTCACCCGGCCCCGTTGCCCTGCCGCGCCTGCAGCCGCTTGGCCCCGCAGCCAGCGCGCGTGCCCGAGCCGAGCCACTCAATCCGCCGCGCCTCCCGTTGCAAGCCGCGCGCGAGAGCCGTGGTGGCCGACCGCCTGGTCGCCACCATCGTCAGCGCCTGCCCGCGCCTGTCGCCCGTGTCACCGCCTCGCCGTCATCACCGTCGTCATCGCCTCGGCCCCGCCACTCCGCGCGCAAGCCGCCAAGGGACGGAGGCAGAGCCCCTCCTCCCTCTACCACGTCGCCCCCGCTCCCCTCCTCCTTTTCCCAAAGAGGCAAGGGGCGAGCCCCCTTTCTCTCCCTCATTTTCCCCTTTTTCCCCCCGCCGGCGTCATCCTCCCTCCGTCCTGTCGCCGATTTGGCCGCGAGCGCCGAGCGCCAGCTCGCGCCTTGA
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| CDS seq | MGRISFGPSPPPPALSLSLSLSPSLPSPRSARACASAAPSAPSPSLSFSPSLASSPPAKPAPARRCSRARPRGCHPCRAACAVRVTRPRCPAAPAAAWPRSQRACPSRATQSAAPPVASRAREPWWPTAWSPPSSAPARACRPCHRLAVITVVIASAPPLRAQAAKGRRQSPSSLYHVAPAPLLLFPKRQRAPFLSLIFPFFPPPASSSLRPVADLAASAERQLAP |
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| Protein seq | MGRISFGPSPPPPALSLSLSLSPSLPSPRSARACASAAPSAPSPSLSFSPSLASSPPAKPAPARRCSRARPRGCHPCRAACAVRVTRPRCPAAPAAAWPRSQRACPSRATQSAAPPVASRAREPWWPTAWSPPSSAPARACRPCHRLAVITVVIASAPPLRAQAAKGRRQSPSSLYHVAPAPLLLFPKRQRAPFLSLIFPFFPPPASSSLRPVADLAASAERQLAP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| TMG0411812300.01 | TMG0411812300.01.T01 | Chr04 | 27029306 | 27030187 | + | IGDBv1 | ||
| CDS seq | ATGGGCCGAATCTCTTTCGGCCCATCTCCCCCTCCCCCGGCGCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTTCCCCTCGCTCTGCCCGCGCGTGCGCGAGCGCCGCGCCGAGCGCCCCCTCCCCCTCGCTCTCCTTCTCCCCATCCCTGGCGAGCTCCCCGCCCGCGAAGCCGGCCCCCGCGCGCCGTTGTTCGCGCGCGCGCCCGCGTGGTTGCCACCCGTGCCGCGCCGCCTGCGCCGTCCGCGTCACCCGGCCCCGTTGCCCTGCCGCGCCTGCAGCCGCTTGGCCCCGCAGCCAGCGCGCGTGCCCGAGCCGAGCCACTCAATCCGCCGCGCCTCCCGTTGCAAGCCGCGCGCGAGAGCCGTGGTGGCCGACCGCCTGGTCGCCACCATCGTCAGCGCCTGCCCGCGCCTGTCGCCCGTGTCACCGCCTCGCCGTCATCACCGTCGTCATCGCCTCGGCCCCGCCACTCCGCGCGCAAGCCGCCAAGGGACGGAGGCAGAGCCCCTCCTCCCTCTACCACGTCGCCCCCGCTCCCCTCCTCCTTTTCCCAAAGAGGCAACGAGCCCCCTTTCTCTCCCTCATTTTCCCCTTTTTCCCCCCGCCGGCGTCATCCTCCCTCCGTCCTGTCGCCGATTTGGCCGCGAGCGCCGAGCGCCAGCTCGCGCCTTGA
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| Protein seq | MGRISFGPSPPPPALSLSLSLSPSLPSPRSARACASAAPSAPSPSLSFSPSLASSPPAKPAPARRCSRARPRGCHPCRAACAVRVTRPRCPAAPAAAWPRSQRACPSRATQSAAPPVASRAREPWWPTAWSPPSSAPARACRPCHRLAVITVVIASAPPLRAQAAKGRRQSPSSLYHVAPAPLLLFPKRQRAPFLSLIFPFFPPPASSSLRPVADLAASAERQLAP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: XL628S | XL628S | PKU | NA | NA | NA | NA | NA |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0417086300.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0414161300.01 | SBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0415740800.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0408247100.01 | SBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0411514800.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0408231700.01 | SBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0408683200.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0407099700.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0407080600.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0409210000.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0409754400.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0410452800.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0407667300.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0409573900.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0419682600.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | NA | NA | NA | NA | NA |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
