Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Basic Info

Gene ID	OGI # \| Score	Accession \| Assembly \| Annotation	Location	Links
OsY3551G1227196800.01	OGI:02025568 \| 7/50	Os XI-1B: Y3551 \| Y3551 \| SICAU	Chr12:5555715-5555831	Homologues MicroCollinearity
Gene Symbol	-
Mutant	-
Stuctural Variations	125827_Y3551_INV1203840,125827_Y3551_OTH1203860,CN1_Y3551_INV1202530,CN1_Y3551_OTH1202570,125619_Y3551_INV1207130,125619_Y3551_OTH1207170,02428_Y3551_INS1245330,G46_Y3551_INV1202390,G46_Y3551_OTH1202410,Azucena_Y3551_INS1237360,Kosh_Y3551_TRA1245180,R9311_Y3551_INV1203420,R9311_Y3551_OTH1203440,KY131_Y3551_TRA1242920,HZ_Y3551_INV1203250,HZ_Y3551_OTH1203270,132278_Y3551_INS1244560,Tumba_Y3551_INV1203240,Tumba_Y3551_OTH1203280,Basmati1_Y3551_INS1242670,IR64_Y3551_INV1203570,IR64_Y3551_OTH1203590,NamRoo_Y3551_INS1244180,127652_Y3551_INV1206980,127652_Y3551_OTH1207030,G630_Y3551_INV1203080,G630_Y3551_OTH1203100,ZH11_Y3551_INS1248120,J4155S_Y3551_INV1204130,J4155S_Y3551_OTH1204150,132424_Y3551_INV1203660,132424_Y3551_OTH1203680,D62_Y3551_INV1203550,D62_Y3551_OTH1203570,FS32_Y3551_INV1202980,FS32_Y3551_OTH1203000,DHX2_Y3551_INS1247620,J4155_Y3551_INV1204290,J4155_Y3551_OTH1204310,Y58S_Y3551_INV1204150,Y58S_Y3551_OTH1204170,127564_Y3551_INS1233770,127742_Y3551_INV1203320,127742_Y3551_OTH1203340,117425_Y3551_TRA1239690,R527_Y3551_INV1202890,R527_Y3551_OTH1202910,117534_Y3551_INS1243080,YX1_Y3551_INV1204960,YX1_Y3551_OTH1204980,127518_Y3551_INV1204040,127518_Y3551_OTH1204060,DG_Y3551_INV1202780,DG_Y3551_OTH1202800,Lemont_Y3551_TRA1233670,S548_Y3551_INV1202630,S548_Y3551_OTH1202650,TM_Y3551_INV1205350,TM_Y3551_OTH1205370,G8_Y3551_INV1203600,G8_Y3551_OTH1203640,WSSM_Y3551_INV1202610,WSSM_Y3551_OTH1202660,II32_Y3551_INV1203040,II32_Y3551_OTH1203060,LJ_Y3551_TRA1247570,128077_Y3551_INS1233420, More
DNA seq	TGAAATAGTAGTTTCCATCCCAGACAATAGTGAATACATCCTAGCATTTGCCGGCAAAGCCGAGTAAGCGTGATCAGCGCTTACCCACAGGAACTTGAATAAAGAACCAAATTGCAT
CDS seq	MQFGSLFKFLWVSADHAYSALPANARMYSLLSGMETTIS
Protein seq	MQFGSLFKFLWVSADHAYSALPANARMYSLLSGMETTIS
Function	-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsY3551G1227196800.01	OsY3551G1227196800.01.T01	Chr12	5555715	5555831	-	IGDBv1
CDS seq	ATGCAATTTGGTTCTTTATTCAAGTTCCTGTGGGTAAGCGCTGATCACGCTTACTCGGCTTTGCCGGCAAATGCTAGGATGTATTCACTATTGTCTGGGATGGAAACTACTATTTCA
Protein seq	MQFGSLFKFLWVSADHAYSALPANARMYSLLSGMETTIS

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	None	None	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	NA	NA	NA	NA	NA
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Minghui 63 \| MH63RS3 \| HZAU	NA	NA	NA	NA	NA
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Zhenshan 97 \| ZS97RS3 \| HZAU	NA	NA	NA	NA	NA
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Os XI: R9311 \| R9311 \| AGIS	NA	NA	NA	NA	NA
Os XI-adm: HZ \| HZ \| PKU	NA	NA	NA	NA	NA
Os XI-adm: J4155S \| J4155S \| PKU	NA	NA	NA	NA	NA
Os XI-adm: LK638S \| LK638S \| PKU	NA	NA	NA	NA	NA
Os XI-adm: XL628S \| XL628S \| PKU	NA	NA	NA	NA	NA
Os GJ-temp: 02428 \| 02428 \| SICAU	Os02428G1017803600.01	SBH	None	None	None
Os cB: Basmati1 \| Basmati1 \| SICAU	OsBasmati1G0206671600.01	RBH	None	None	None
Os O.glaberrima: Ogla \| OglaRS2 \| DIADE	NA	NA	NA	NA	NA
Os XI-1A: CN1 \| CN1 \| SICAU	OsCN1G0722622100.01	SBH	None	None	None
Os XI-1A: D62 \| D62 \| SICAU	OsD62G0037499900.01	SBH	None	None	None
Os XI-1A: DG \| DG \| SICAU	OsDGG0716207900.01	SBH	None	None	None
Os GJ-temp: DHX2 \| DHX2 \| SICAU	OsDHX2G1026377800.01	SBH	None	None	None
Os XI-adm: FH838 \| FH838 \| SICAU	OsFH838G1026502200.01	SBH	None	None	None
Os XI-1A: FS32 \| FS32 \| SICAU	OsFS32G0716064300.01	SBH	None	None	None
Os XI-1A: G46 \| G46 \| SICAU	OsG46G0713471700.01	SBH	None	None	None
Os XI-adm: G630 \| G630 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: G8 \| G8 \| SICAU	OsG8G1228030500.01	RBH	None	None	None
Os XI-1A: II32 \| II32 \| SICAU	OsII32G0724349300.01	SBH	None	None	None
Os XI-1B: J4155 \| J4155 \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: Kosh \| Kosh \| SICAU	OsKoshG1027004400.01	SBH	None	None	None
Os GJ-temp: KY131 \| KY131 \| SICAU	NA	NA	NA	NA	NA
Os GJ-trp: Lemont \| Lemont \| SICAU	OsLemontG0814558900.01	SBH	None	None	None
Os GJ-adm: LJ \| LJ \| SICAU	OsLJG0815165300.01	SBH	None	None	None
Os GJ-sbtrp: NamRoo \| NamRoo \| SICAU	OsNamRooG0924242500.01	SBH	None	None	None
Os XI-1B: R498 \| R498 \| SICAU	OsR498G0917101500.01	SBH	None	None	None
Os XI-1B: R527 \| R527 \| SICAU	OsR527G1020363200.01	SBH	None	None	None
Os XI-1B: S548 \| S548 \| SICAU	OsS548G0833432900.01	RBH	None	None	None
Os XI-2: TM \| TM \| SICAU	TMG1026185800.01	SBH	None	None	None
Os XI-3: Tumba \| Tumba \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: WSSM \| WSSM \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: Y3551 \| Y3551 \| SICAU	OsY3551G1022112600.01	RBH	None	None	None
Os XI-1B: Y58S \| Y58S \| SICAU	OsY58SG0511140500.01	RBH	None	None	None
Os XI-adm: YX1 \| YX1 \| SICAU	OsYX1G1026949000.01	SBH	None	None	None
Os GJ-temp: ZH11 \| ZH11 \| SICAU	OsZH11G1024406200.01	SBH	None	None	None

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