Basic Info
Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsXL628S_11g0134700 OGI:11023991 | 5/50 Os XI-adm: XL628S | XL628S | PKU Chr11:13404912-13405241
Gene Symbol -
Mutant -
Stuctural Variations

II32_XL628S_TRA1109250,R9311_XL628S_INV1120050,R9311_XL628S_OTH1120060,Y3551_XL628S_INV1116100,MH63RS3_XL628S_INV1120850,MH63RS3_XL628S_OTH1120860,127518_XL628S_INS1122010,127518_XL628S_DEL1122090,Lemont_XL628S_INV1124040,Lemont_XL628S_INS1124100,R527_XL628S_INV1122620,R527_XL628S_OTH1122630,127742_XL628S_INV1119670,127742_XL628S_OTH1119680,IR64_XL628S_INV1108390_1,ZH11_XL628S_INV1120930,ZH11_XL628S_OTH1121070,WSSM_XL628S_INV1112100,127564_XL628S_INV1115530,FH838_XL628S_INV1114680,132278_XL628S_INV1122800,132278_XL628S_OTH1122950,YX1_XL628S_OTH1113160,Tumba_XL628S_INV1112850,Tumba_XL628S_OTH1113050,DHX2_XL628S_INV1120180,DHX2_XL628S_OTH1120370,127652_XL628S_INV1128130,125827_XL628S_INV1116710_20,Y58S_XL628S_INV1123780,R498_XL628S_INV1113660,R498_XL628S_INS1113670,R498_XL628S_OTH1113680,132424_XL628S_INV1118160,G46_XL628S_DEL1111270,G630_XL628S_OTH1117530,G630_XL628S_INV1116850,S548_XL628S_INV1116390,S548_XL628S_OTH1116400,D62_XL628S_OTH1111160,02428_XL628S_INV1118140,02428_XL628S_OTH1118310,FS32_XL628S_OTH1112420,CN1_XL628S_INV1115300_1,Basmati1_XL628S_OTH1125580,Basmati1_XL628S_INV1125530,128077_XL628S_INV1120720_6,128077_XL628S_OTH1120870,117534_XL628S_OTH1116910,117534_XL628S_INV1116180,DG_XL628S_INV1111890_1,G8_XL628S_INV1107520,

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DNA seq

TTACACATAGAATCGTCTAAGGGAAGCGGCGTTCCAGGAGTGGTCGAACTTTTCGCCCTCCAGTGTTGCCAGCCGAAAGGAACCCATTCGAGATTTGTGCTTGATCAAATATGGTCCTTCCCACTTAGATTCCAGTTTCCCGACTGCCACAGGGTTCGCCTTTTTCCTCAGTACGAGATGGCCGGGCCGAAGCTCTGTCGGTCGAACCTTTCTGTTATAGGTTGCCGAAGTGCCTTTAGCGTACTTGCGCATGTGTTCAAGTGCTTCGACTCTCACCCCTTCCAGGAGTTCGAGCGACACTTCGCGCCCGTCTTCGCCCCCGGAAAACAT
CDS seq

MFSGGEDGREVSLELLEGVRVEALEHMRKYAKGTSATYNRKVRPTELRPGHLVLRKKANPVAVGKLESKWEGPYLIKHKSRMGSFRLATLEGEKFDHSWNAASLRRFYV
Protein seq

MFSGGEDGREVSLELLEGVRVEALEHMRKYAKGTSATYNRKVRPTELRPGHLVLRKKANPVAVGKLESKWEGPYLIKHKSRMGSFRLATLEGEKFDHSWNAASLRRFYV
Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsXL628S_11g0134700 OsXL628S_11g0134700.10 Chr11 13404912 13405241 - .
CDS seq

ATGTTTTCCGGGGGCGAAGACGGGCGCGAAGTGTCGCTCGAACTCCTGGAAGGGGTGAGAGTCGAAGCACTTGAACACATGCGCAAGTACGCTAAAGGCACTTCGGCAACCTATAACAGAAAGGTTCGACCGACAGAGCTTCGGCCCGGCCATCTCGTACTGAGGAAAAAGGCGAACCCTGTGGCAGTCGGGAAACTGGAATCTAAGTGGGAAGGACCATATTTGATCAAGCACAAATCTCGAATGGGTTCCTTTCGGCTGGCAACACTGGAGGGCGAAAAGTTCGACCACTCCTGGAACGCCGCTTCCCTTAGACGATTCTATGTGTAA

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Protein seq

MFSGGEDGREVSLELLEGVRVEALEHMRKYAKGTSATYNRKVRPTELRPGHLVLRKKANPVAVGKLESKWEGPYLIKHKSRMGSFRLATLEGEKFDHSWNAASLRRFYV
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g19520 SBH 0.063391 0.026100 0.062862
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0006221 SBH 0.108103 2.532727 1.637422
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0210900 SBH 0.0014695 0.0050605 0.001249
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0187500 SBH 0 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Os XI: R9311 | R9311 | AGIS R9311C11g37903 SBH None None None
Os XI-adm: HZ | HZ | PKU OsHZ_11g0135900 RBH None None None
Os XI-adm: J4155S | J4155S | PKU OsJ4155_11g0133200 RBH None None None
Os XI-adm: LK638S | LK638S | PKU OsLK638S_11g0130500 RBH None None None
Os XI-adm: XL628S | XL628S | PKU OsXL628S_12g0114100 RBH None None None
Os GJ-temp: 02428 | 02428 | SICAU Os02428G1121624300.01 SBH None None None
Os cB: Basmati1 | Basmati1 | SICAU OsBasmati1G1032887200.01 SBH None None None
Os O.glaberrima: Ogla | OglaRS2 | DIADE Oglab_034336 SBH None None None
Os XI-1A: CN1 | CN1 | SICAU OsCN1G1131851000.01 RBH None None None
Os XI-1A: D62 | D62 | SICAU OsD62G1133341000.01 SBH None None None
Os XI-1A: DG | DG | SICAU OsDGG1125509400.01 SBH None None None
Os GJ-temp: DHX2 | DHX2 | SICAU OsDHX2G1129935600.01 SBH None None None
Os XI-adm: FH838 | FH838 | SICAU OsFH838G1130490100.01 SBH None None None
Os XI-1A: FS32 | FS32 | SICAU OsFS32G0509725900.01 SBH None None None
Os XI-1A: G46 | G46 | SICAU OsG46G0509114500.01 SBH None None None
Os XI-adm: G630 | G630 | SICAU OsG630G0880002426.01 SBH None None None
Os XI-1B: G8 | G8 | SICAU OsG8G1125232000.01 SBH None None None
Os XI-1A: II32 | II32 | SICAU NA NA NA NA NA
Os XI-1B: J4155 | J4155 | SICAU OsJ4155G1122197400.01 SBH None None None
Os GJ-temp: Kosh | Kosh | SICAU OsKoshG1130995900.01 SBH None None None
Os GJ-temp: KY131 | KY131 | SICAU OsKY131G1118347300.01 SBH None None None
Os GJ-trp: Lemont | Lemont | SICAU OsLemontG1224065900.01 SBH None None None
Os GJ-adm: LJ | LJ | SICAU OsLJG1122334100.01 SBH None None None
Os GJ-sbtrp: NamRoo | NamRoo | SICAU OsNamRooG1232231300.01 SBH None None None
Os XI-1B: R498 | R498 | SICAU OsR498G0612590600.01 SBH None None None
Os XI-1B: R527 | R527 | SICAU OsR527G0880002286.01 SBH None None None
Os XI-1B: S548 | S548 | SICAU OsS548G0880201407.01 SBH None None None
Os XI-2: TM | TM | SICAU TMG0880001811.01 SBH None None None
Os XI-3: Tumba | Tumba | SICAU OsTumbaG0509361500.01 SBH None None None
Os XI-adm: WSSM | WSSM | SICAU OsWSSMG0880002642.01 SBH None None None
Os XI-1B: Y3551 | Y3551 | SICAU OsY3551G1125059400.01 SBH None None None
Os XI-1B: Y58S | Y58S | SICAU OsY58SG1127436400.01 RBH None None None
Os XI-adm: YX1 | YX1 | SICAU OsYX1G0880001797.01 SBH None None None
Os GJ-temp: ZH11 | ZH11 | SICAU OsZH11G1127698800.01 SBH None None None
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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