Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsXL628S_11g0133000 | OGI:11034565 | 29/50 | Os XI-adm: XL628S | XL628S | PKU | Chr11:13088608-13090662 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | II32_XL628S_TRA1109250,R9311_XL628S_INV1120050,MH63RS3_XL628S_INV1120850,Lemont_XL628S_INV1124040,R527_XL628S_INV1122620,127742_XL628S_INV1119670,IR64_XL628S_INV1108390_1,ZH11_XL628S_INV1120930,WSSM_XL628S_INV1112100,FH838_XL628S_INV1114680,132278_XL628S_INV1122800,Tumba_XL628S_INV1112850,DHX2_XL628S_INV1120180,125827_XL628S_INV1116710_20,G46_XL628S_DEL1111270,G46_XL628S_DEL1111390,G630_XL628S_INV1116850,S548_XL628S_INV1116390,D62_XL628S_OTH1111340,02428_XL628S_INV1118140,CN1_XL628S_INV1115300_1,128077_XL628S_INV1120720_6,117534_XL628S_INV1116180,DG_XL628S_INV1111890_1,G8_XL628S_INV1107520,
More
|
||||||||||
| DNA seq | CTAAACCGCCGGGGCTATAGGGATCTTCTTTTCCGGACTCCGTGGCTTCAACTGCTCCCTAACTTCCGCTCTAACGGCTTCATCGAGCTCCTCCGGAGTCATGTCGTACGCCCTTTCCTTCTTCGGCCTTGATGGCGTGGGCTCATATGGGCGGGACCTTGACGGTGTAGACTTGGCAGATGGTGCAGGCTGAGGAGTCGTTGCCCTCGGACCCGATGGTGCAGACTTGGCAGCAGGTGCAGGCGGAGGAGGTTGTGGAGGCGGAGGAGCAGGAGGAGCCAGTGCAAGCGAAGGAGCCGAAGGAGACTGTGGAGGCGGAGTAGGCGGAGGAGACGGTGCTTGCGGTAGGGAAGGAGGAGCGGATGACCCTTCTTGCCCGAGGAACACGATGTACTTCTTCCGCCGGAGTATGATGGCGTGGGCTGTGTTTCCAAGTTTTGTCTCCCTGTCTCCTCCGGGGATGTCAAGCTCGAGATCATCGTATGTTCGTTCCACCAGCTCTATCTCGACCTTCGCGTATCCATGTGGAATGGGCTGCAATGGTATGTACCCGAAGGGTCTGTGGGTATGGCCATGCCCGACGCCACCTGCAGAAGAAATCGAGTTTATTAATTACTAATCAACATATACATGTAACAAAGTTCGCAGTCTATAAATATGTATCTCGCATACCTTGATAGACAAGTTCCTGAAGGGAGTATGCATATCGCAGGGTGTCTGCTTCGTGATCTCATCAACGGGGAAGTGGGTTGCTTCGTGAGCTGCGATGGCCTCAATGCCCTCTGATCCAACATGGCCCGTTGATGCGCAGCTGCTGCGGTTGCCTGAGAGGCTCACCATGACGGGCGCTTGTGTTTCTATTCCACGCTGCTCGCCAAGGCGTTGGTTCACCTGTCTTGTCACCTCCTCTTGCATCCTTGCCTTGTAGGTGGACACCTTGTACTCAAGATCGACGATCTTAGCCTCTGTATCCCTCTTGCTCCTCATCCGACTCCTATACGTGTGGATGTCCTCTTTGAATCCATATTTCCAAGGAACGATGCCTTTGCCTCGCATTAGTCCTGGAAGCTCAGGATTCTGTAGTGCGAGGGTGAGCTCGTCCTTCTCTCTGTCTGGCCTGAAAGTCCCCTGCGTAGAGGCTTCAATTGCATTCACAAGTTGGCGGGCTGCTTTTCGAATCTCATCGCCGAATATGAGGGAGCCATCACCTGGATTGAGCGATCCACCGTGTGCATAGAACTAGTTCCTTGATCGCTCAGGCCATTTAGCCGTTGCTAGCTCGATACCCCGTGCTATCAAGTCAGCTTCCAACTTGTCCCACTTAGGGATTGCCTTTCCATATCCGACTGACCCTAGCCAGTGATGGTATTTCTTCCTAGCTGCATTGGCTTTGTTCTTTTCTATCTATGCTTGCCCTTGCGCTCCAGTCTTGTAGGCCACAAACGCATCCCAGTGATCCCTTAGCTTCTTATGCTCGTTGAAATCAGGTGTCAAGCCCTTGAGGATGTATCTCTTGTACAAATCTGATTTGTAGCTCTAGAACAGTTATGCCATTTTCTTCAGGGTCCATTCTTTGCATCTTGGACGATCTGCCTCAGGGATCGTGAATATCTCCAGCAGGGTTGTCCACAACATTTCTTTCTCTGTGTCAGGGAGAAAACTATCTTCATCCTTGCGTGACCTTGTTCGACGCCAGTACACTATGCTGATGGGGACGTTGTCTCTCACGACCCAACCGCAATGATTCATGAACTTTCGTCCTATACCCGCCGGGGTTACTGGTTCGCTGTCTGGGGCAATCTCAGTAACAATGTGCCTTCACTCTAGCTTCTTCGTGGGACCTCTTTTCCCGCGTGGCCTCTTCTGTCTGGCCGACGGTTGGCTATCAGTCCCCTCCTCGGTCCCATCCTGGTTACCATCCTGGTTACCCTCCTCGTTGCCCTCCTCGTTCAGGTATTGGTTGGGATCCTCGTTCCCCTCCTCATCCACCCAGTACTGACTGCTGCCCTCTGCGATAGTGCCTAATAGTATTTGCTCGTCATCGCGGTCTGCCAT
More
|
||||||||||
| CDS seq | MADRDDEQILLGTIAEGSSQYWVDEEGNEDPNQYLNEEGNEEGNQDGDGSLIFGDEIRKAARQLVNAIEASTQGTFRPDREKDELTLALQNPELPGLMRGKGIVPWKYGFKEDIHTYRSRMRSKRDTEAKIVDLEYKVSTYKARMQEEVTRQVNQRLGEQRGIETQAPVMVSLSGNRSSCASTGHVGSEGIEAIAAHEATHFPVDEITKQTPCDMHTPFRNLSIKPIPHGYAKVEIELVERTYDDLELDIPGGDRETKLGNTAHAIILRRKKYIVFLGQEGSSAPPSLPQAPSPPPTPPPQSPSAPSLALAPPAPPPPQPPPPAPAAKSAPSGPRATTPQPAPSAKSTPSRSRPYEPTPSRPKKERAYDMTPEELDEAVRAEVREQLKPRSPEKKIPIAPAV
More
|
||||||||||
| Protein seq | MADRDDEQILLGTIAEGSSQYWVDEEGNEDPNQYLNEEGNEEGNQDGDGSLIFGDEIRKAARQLVNAIEASTQGTFRPDREKDELTLALQNPELPGLMRGKGIVPWKYGFKEDIHTYRSRMRSKRDTEAKIVDLEYKVSTYKARMQEEVTRQVNQRLGEQRGIETQAPVMVSLSGNRSSCASTGHVGSEGIEAIAAHEATHFPVDEITKQTPCDMHTPFRNLSIKPIPHGYAKVEIELVERTYDDLELDIPGGDRETKLGNTAHAIILRRKKYIVFLGQEGSSAPPSLPQAPSPPPTPPPQSPSAPSLALAPPAPPPPQPPPPAPAAKSAPSGPRATTPQPAPSAKSTPSRSRPYEPTPSRPKKERAYDMTPEELDEAVRAEVREQLKPRSPEKKIPIAPAV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsXL628S_11g0133000 | OsXL628S_11g0133000.10 | Chr11 | 13088608 | 13090662 | - | . | ||
| CDS seq | ATGGCAGACCGCGATGACGAGCAAATACTATTAGGCACTATCGCAGAGGGCAGCAGTCAGTACTGGGTGGATGAGGAGGGGAACGAGGATCCCAACCAATACCTGAACGAGGAGGGCAACGAGGAGGGTAACCAGGATGGTGATGGCTCCCTCATATTCGGCGATGAGATTCGAAAAGCAGCCCGCCAACTTGTGAATGCAATTGAAGCCTCTACGCAGGGGACTTTCAGGCCAGACAGAGAGAAGGACGAGCTCACCCTCGCACTACAGAATCCTGAGCTTCCAGGACTAATGCGAGGCAAAGGCATCGTTCCTTGGAAATATGGATTCAAAGAGGACATCCACACGTATAGGAGTCGGATGAGGAGCAAGAGGGATACAGAGGCTAAGATCGTCGATCTTGAGTACAAGGTGTCCACCTACAAGGCAAGGATGCAAGAGGAGGTGACAAGACAGGTGAACCAACGCCTTGGCGAGCAGCGTGGAATAGAAACACAAGCGCCCGTCATGGTGAGCCTCTCAGGCAACCGCAGCAGCTGCGCATCAACGGGCCATGTTGGATCAGAGGGCATTGAGGCCATCGCAGCTCACGAAGCAACCCACTTCCCCGTTGATGAGATCACGAAGCAGACACCCTGCGATATGCATACTCCCTTCAGGAACTTGTCTATCAAGCCCATTCCACATGGATACGCGAAGGTCGAGATAGAGCTGGTGGAACGAACATACGATGATCTCGAGCTTGACATCCCCGGAGGAGACAGGGAGACAAAACTTGGAAACACAGCCCACGCCATCATACTCCGGCGGAAGAAGTACATCGTGTTCCTCGGGCAAGAAGGGTCATCCGCTCCTCCTTCCCTACCGCAAGCACCGTCTCCTCCGCCTACTCCGCCTCCACAGTCTCCTTCGGCTCCTTCGCTTGCACTGGCTCCTCCTGCTCCTCCGCCTCCACAACCTCCTCCGCCTGCACCTGCTGCCAAGTCTGCACCATCGGGTCCGAGGGCAACGACTCCTCAGCCTGCACCATCTGCCAAGTCTACACCGTCAAGGTCCCGCCCATATGAGCCCACGCCATCAAGGCCGAAGAAGGAAAGGGCGTACGACATGACTCCGGAGGAGCTCGATGAAGCCGTTAGAGCGGAAGTTAGGGAGCAGTTGAAGCCACGGAGTCCGGAAAAGAAGATCCCTATAGCCCCGGCGGTTTAG
More
|
|||||||
| Protein seq | MADRDDEQILLGTIAEGSSQYWVDEEGNEDPNQYLNEEGNEEGNQDGDGSLIFGDEIRKAARQLVNAIEASTQGTFRPDREKDELTLALQNPELPGLMRGKGIVPWKYGFKEDIHTYRSRMRSKRDTEAKIVDLEYKVSTYKARMQEEVTRQVNQRLGEQRGIETQAPVMVSLSGNRSSCASTGHVGSEGIEAIAAHEATHFPVDEITKQTPCDMHTPFRNLSIKPIPHGYAKVEIELVERTYDDLELDIPGGDRETKLGNTAHAIILRRKKYIVFLGQEGSSAPPSLPQAPSPPPTPPPQSPSAPSLALAPPAPPPPQPPPPAPAAKSAPSGPRATTPQPAPSAKSTPSRSRPYEPTPSRPKKERAYDMTPEELDEAVRAEVREQLKPRSPEKKIPIAPAV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | R9311C11g37616 | SBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_11g0134200 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_11g0131800 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_11g0129400 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_10g0052800 | SBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1121329000.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1134408900.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1131603300.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1134998900.01 | SBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1124866700.01 | SBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1129670700.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1129837600.01 | SBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1122344900.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1120816300.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1180003288.01 | SBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1180002729.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1180003050.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1180203734.01 | SBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1120839500.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1121955300.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1170573400.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1180002885.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1142433400.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | NA | NA | NA | NA | NA |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1124390300.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1119943400.01 | SBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1125487200.01 | SBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1127283900.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1131195300.01 | SBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1128028100.01 | RBH | None | None | None |
