Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsR527G1180002919.01 | OGI:11027170 | 29/50 | Os XI-1B: R527 | R527 | SICAU | Chr11:13499982-13501890 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | 127652_R527_DEL1124610,Basmati1_R527_INV1123530_1,Azucena_R527_INV1123980,II32_R527_DEL1120560_1,KY131_R527_OTH1122310,TM_R527_DEL1118620,NamRoo_R527_OTH1122910,132424_R527_OTH1115540,
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| DNA seq | AAAATGATATGTGGGTCCCACTAACCATTACCCTACCACAAGTGGTAGGTAACCGTTGCCTGGCCGGTTCGGCCGAACCCCTGGTGGGCCCAACCGGCCCCACTTTCGACCATTGGATTCCAACGGTCAGTGTGGTCGTGGCACAGCAAATTTTCATTGGAAAATTTATTTTGGTTTGCTCTGAAAAATTCATTTGAAGAATTTCCTCAAGATTCAAAAATCCTAAATGCAACTTTGAAATTCAAACATGCGATGATGCAAAATTTCAAATTGTTGAAAAGCAAAAATGCAGGTACATACCAATTTACCTGTTGGCGAAGGTTGTGTCATTTAAAGTCCGACGTGCAGGACCGTACCTCCTTTTGATTCAGTTCGTGGATTTTTCACCCGTCTCCGGAGGTGATGGAGCGGGCGTCTTTGGCTTTTCCCTCCACACCTTCCTTGGCTTTGGTGCGGACGGCGGCTTCTTCTGAGCCGACTGCTCTAACTTCTTGGCCGGTACGGTTGGTTTTACCGGCGTCCTCCAATAACAGTTCCTAGGCATCGTTGTTTCCTTCTCCAGGAAATTCTGCATGAACTTCACCAGGTTGTCCGTCTTGGGTGGCTCCACTTCGACCACTTGAATATTCTGTGGATTCGGCCCATACTTTATCCTGACCATGGAGCATTGTTCCGTCCTCGGTTGGAACTCAAACTTCTCTTCCGTCCCGTTGATGTGGAAATGGATACTCCATGTTCCCACGTCAATGTTGGCTCCTGCGGTGCTAAGGAACGGACGCCCCAGGATGAGCGCCGTCTCCTTTCCTGTGTCCATATCCAGCACCACGAAGTCAACCGGGATGAAGAAGTCCCGTATCTTGACTGGCACATCCCCCACTATCCCTGCCGGGTAACGGACTAACGAATCAGCCAGTTGAAGGCGCATTGGTGTTGGTGCCAACACCGTGAAGTTGAGCTTGTCGAAGATATCTTTCGGCATGACGCTGACACTGGCTCCAACGTCGCACAAGGCCTGGTCGAACGGTTTTGCCCCGATCGAGCAGGTGATCGTAGGACACCCCAAATCTTTCTTCTTCTCCGGGAGCTTGTAGAGTATCATGTTGCTGCATTGCTCCATCAGCTTGACCAGATCTGTTGTTGGGAGCGGCCTCTTGTTGTTGAGTATGTCCTTGAGATAACGGGCGTATGTTGGCACTTGCATAGCGTCCAACAACGACACGTTGATGTGGATCTTCTGGATTACTTCAACAAAACGAGCAAATTGCTCGTCCACTGACGATTTCCTACTCTGTTGAGGAAACGGTAGAAATCGTGTGTCGCAGTACTCCTGCGGCACGGTCTTCTCTGGCTGAACCTCTTTGTCAGCCGAGTCACTAGATGGCGCTTCTTTGGTTATCCCATTAGTTCCTGCAGGGTTAGGATATGGCGGATCACGAGTGGACTTACCTCCCCTCGTCGTGATCGCCTTAACATTTTCAACGGAGGAGTCGGGTTGCCCTGGAATCCTCCCTATTTCATTTGCAGGGACTAAGGATGCCAACTGAGCTAGCTGGGTTTCTATCATTTTATTAAAGCTCAGCTGGTTTTGAAAAGCAGAAGCAAGGCCATCTAACTTGACGTTAATGTTCTCTAGGATCTTATCATTGGCAGCAAGCTTTTTGCTTAGCGCATCAGTGGTTTTAGCTTGTGCAAAAACTAGATCCTTCAAGGAGGGCTGGTTAGAAAAGTTACTGTTGTTGTTACCTCCTTGATAATATGGGCGTGGTTGGTTCCACCCCTGACCTCCTTGTGGACGGTACCCGATGTTGTTGCCCATGTACATCGCCTCCTCACGGGTTTCCGGGCAGTCATTCCCATAATGACCCGTGCCGCCGCAGACCTCACACGTAACGTGTGAGTCCAAGGCCTT
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| CDS seq | MYMGNNIGYRPQGGQGWNQPRPYYQGGNNNSNFSNQPSLKDLVFAQAKTTDALSKKLAANDKILENINVKLDGLASAFQNQLSFNKMIETQLAQLASLVPANEIGRIPGQPDSSVENVKAITTRGGKSTRDPPYPNPAGTNGITKEAPSSDSADKEVQPEKTVPQEYCDTRFLPFPQQSRKSSVDEQFARFVEVIQKIHINVSLLDAMQVPTYARYLKDILNNKRPLPTTDLVKLMEQCSNMILYKLPEKKKDLGCPTITCSIGAKPFDQALCDVGASVSVMPKDIFDKLNFTVLAPTPMRLQLADSLVRYPAGIVGDVPVKIRDFFIPVDFVVLDMDTGKETALILGRPFLSTAGANIDVGTWSIHFHINGTEEKFEFQPRTEQCSMVRIKYGPNPQNIQVVEVEPPKTDNLVKFMQNFLEKETTMPRNCYWRTPVKPTVPAKKLEQSAQKKPPSAPKPRKVWREKPKTPAPSPPETGEKSTN
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| Protein seq | MYMGNNIGYRPQGGQGWNQPRPYYQGGNNNSNFSNQPSLKDLVFAQAKTTDALSKKLAANDKILENINVKLDGLASAFQNQLSFNKMIETQLAQLASLVPANEIGRIPGQPDSSVENVKAITTRGGKSTRDPPYPNPAGTNGITKEAPSSDSADKEVQPEKTVPQEYCDTRFLPFPQQSRKSSVDEQFARFVEVIQKIHINVSLLDAMQVPTYARYLKDILNNKRPLPTTDLVKLMEQCSNMILYKLPEKKKDLGCPTITCSIGAKPFDQALCDVGASVSVMPKDIFDKLNFTVLAPTPMRLQLADSLVRYPAGIVGDVPVKIRDFFIPVDFVVLDMDTGKETALILGRPFLSTAGANIDVGTWSIHFHINGTEEKFEFQPRTEQCSMVRIKYGPNPQNIQVVEVEPPKTDNLVKFMQNFLEKETTMPRNCYWRTPVKPTVPAKKLEQSAQKKPPSAPKPRKVWREKPKTPAPSPPETGEKSTN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsR527G1180002919.01 | OsR527G1180002919.01.T01 | Chr11 | 13499982 | 13501890 | - | IGDBv1 | ||
| CDS seq | ATGTACATGGGCAACAACATCGGGTACCGTCCACAAGGAGGTCAGGGGTGGAACCAACCACGCCCATATTATCAAGGAGGTAACAACAACAGTAACTTTTCTAACCAGCCCTCCTTGAAGGATCTAGTTTTTGCACAAGCTAAAACCACTGATGCGCTAAGCAAAAAGCTTGCTGCCAATGATAAGATCCTAGAGAACATTAACGTCAAGTTAGATGGCCTTGCTTCTGCTTTTCAAAACCAGCTGAGCTTTAATAAAATGATAGAAACCCAGCTAGCTCAGTTGGCATCCTTAGTCCCTGCAAATGAAATAGGGAGGATTCCAGGGCAACCCGACTCCTCCGTTGAAAATGTTAAGGCGATCACGACGAGGGGAGGTAAGTCCACTCGTGATCCGCCATATCCTAACCCTGCAGGAACTAATGGGATAACCAAAGAAGCGCCATCTAGTGACTCGGCTGACAAAGAGGTTCAGCCAGAGAAGACCGTGCCGCAGGAGTACTGCGACACACGATTTCTACCGTTTCCTCAACAGAGTAGGAAATCGTCAGTGGACGAGCAATTTGCTCGTTTTGTTGAAGTAATCCAGAAGATCCACATCAACGTGTCGTTGTTGGACGCTATGCAAGTGCCAACATACGCCCGTTATCTCAAGGACATACTCAACAACAAGAGGCCGCTCCCAACAACAGATCTGGTCAAGCTGATGGAGCAATGCAGCAACATGATACTCTACAAGCTCCCGGAGAAGAAGAAAGATTTGGGGTGTCCTACGATCACCTGCTCGATCGGGGCAAAACCGTTCGACCAGGCCTTGTGCGACGTTGGAGCCAGTGTCAGCGTCATGCCGAAAGATATCTTCGACAAGCTCAACTTCACGGTGTTGGCACCAACACCAATGCGCCTTCAACTGGCTGATTCGTTAGTCCGTTACCCGGCAGGGATAGTGGGGGATGTGCCAGTCAAGATACGGGACTTCTTCATCCCGGTTGACTTCGTGGTGCTGGATATGGACACAGGAAAGGAGACGGCGCTCATCCTGGGGCGTCCGTTCCTTAGCACCGCAGGAGCCAACATTGACGTGGGAACATGGAGTATCCATTTCCACATCAACGGGACGGAAGAGAAGTTTGAGTTCCAACCGAGGACGGAACAATGCTCCATGGTCAGGATAAAGTATGGGCCGAATCCACAGAATATTCAAGTGGTCGAAGTGGAGCCACCCAAGACGGACAACCTGGTGAAGTTCATGCAGAATTTCCTGGAGAAGGAAACAACGATGCCTAGGAACTGTTATTGGAGGACGCCGGTAAAACCAACCGTACCGGCCAAGAAGTTAGAGCAGTCGGCTCAGAAGAAGCCGCCGTCCGCACCAAAGCCAAGGAAGGTGTGGAGGGAAAAGCCAAAGACGCCCGCTCCATCACCTCCGGAGACGGGTGAAAAATCCACGAACTGA
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| Protein seq | MYMGNNIGYRPQGGQGWNQPRPYYQGGNNNSNFSNQPSLKDLVFAQAKTTDALSKKLAANDKILENINVKLDGLASAFQNQLSFNKMIETQLAQLASLVPANEIGRIPGQPDSSVENVKAITTRGGKSTRDPPYPNPAGTNGITKEAPSSDSADKEVQPEKTVPQEYCDTRFLPFPQQSRKSSVDEQFARFVEVIQKIHINVSLLDAMQVPTYARYLKDILNNKRPLPTTDLVKLMEQCSNMILYKLPEKKKDLGCPTITCSIGAKPFDQALCDVGASVSVMPKDIFDKLNFTVLAPTPMRLQLADSLVRYPAGIVGDVPVKIRDFFIPVDFVVLDMDTGKETALILGRPFLSTAGANIDVGTWSIHFHINGTEEKFEFQPRTEQCSMVRIKYGPNPQNIQVVEVEPPKTDNLVKFMQNFLEKETTMPRNCYWRTPVKPTVPAKKLEQSAQKKPPSAPKPRKVWREKPKTPAPSPPETGEKSTN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0426850 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g20640 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0426850 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0331200 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0194000 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | OsHZ_08g0120000 | SBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_08g0119500 | SBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_11g0101200 | SBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_11g0101800 | SBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1121574200.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1135114700.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1131874200.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0621281200.01 | SBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1125189300.01 | SBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1129560500.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1129510000.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1122305200.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1120969200.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1117335000.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1125339400.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1133683700.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1122356900.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1130493700.01 | SBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1180203671.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1121213200.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1122354100.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0033912300.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0101016200.01 | SBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1020251500.01 | SBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1142574600.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1129287400.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1124660800.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1119610000.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1125144500.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0604430900.01 | SBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0617699500.01 | SBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1127916300.01 | RBH | None | None | None |
