Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsR527G1180002914.01 | OGI:11037430 | 17/50 | Os XI-1B: R527 | R527 | SICAU | Chr11:13213338-13217866 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | 127518_R527_DEL1116200,HZ_R527_OTH1122020,J4155_R527_OTH1114040,J4155S_R527_OTH1122420,Basmati1_R527_INV1123530_1,Azucena_R527_INV1123980,ZS97RS3_R527_OTH1124980,II32_R527_DEL1120570,XL628S_R527_OTH1125340,KY131_R527_OTH1122310,125619_R527_OTH1116240,TM_R527_DEL1118460,NamRoo_R527_OTH1122910,LK638S_R527_OTH1123250,
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| DNA seq | ATCGTAACCGGTTGTGGTTTGCCGATGGGACAATGGCCGATTTTTTCATATCGCCCTTAGTTCAAGTTATAATTTTATCAATGCTTTTGAGATTGTAAAATTAGGGGGGCACATATATGAAAATTGCAAATTTTTGAGCAAAATATGGAGTTCTATTGAATCGGCATAAAATTATGAGGATAAGTTCGATAAAGAGCCAAAGTTTCTTAGTCGATTACAAAAATTTCTAAGACCTATTACACAAGATATCATTGAGACAAATATTGCTGGATAGCCGAAATAACCCTTTGCCTGATTTGTTCTACTTCTTCAATGGCTTGGGCATCTTGAGTGTCAGTTCCAGGGATGACTTTTAAAGACTTGGTGAGATCAGCAACATTCTTGATGGCCAATTTTAGTCTTGCCTTCTGTTCTTCGATAGATTTTGGGAGATCGGCTAGCTTTTTATGTTCCATATCCAGCTCGGCGTTGCATTCTTCAAGTTGTGCCAAGAGCTCAATCTTACGGACTTCGAGCCGATCAATATTGGACTTGATCGGGCCCTCAGATAGCTGATCAAGCTTGGACTTCTCTTCGTGCACAAGCAGCCGATTGACTTGAATGTCCTTGCGCTCCCGACGTTCGGCTAGTCTTAATTTGGCCTTTTCCAGCTTGAATTGATGCTGCTCAAGATAGACAGCTGAAGTGAAGACATCGGCTAGCTCATCTGGGATTAGAGGTTGGATCTCGTGTAACCGAGTTCTAATCGGCCCACAGTTTACCACCAAGTTGTCTAGTGATGATGCCTCTAGCCGATGAGAGATGTCTTCAAGGGTTTTCTTCACATCATCGGACAAGGGAACTAAAGACTTGCTGGTGGTGTCTTCTTCTGTTTCTTCATCAAGATAGTCTTTAATATCGAAAGAGAACAGATCGGCTAAGGCCTGCAAGAAGGAATTTGAAAACAGTTGAGTATCAACATGAGTTATTTGGCCGATTCAAGATTTTTATAGACAAGACTTACTGGGATAGCAGGAACAGCTGGTTGTTCTTCTTCTTCAATATGGTGGCTTTCTACAGCCGATGGAGTTTGATCACTCTATGATTGTTGTACAGGAGAAGGAGGAGGAGGAGGCTACGAAAGAGACAAGTGTAAGATAAAATCAGGCTGAGGTCAACTAGTGGAAGAGTTAAGAATATCTTACTGGTGGAGCTGATTTGAGAATTGCTATTGCCGATTTCTTCTTCACAACAGTTTTCTTCTTCTGCAACTATAAAATCTGTGAGTAATCGGCCATAAAATGAAGTGATTACAAAAGGAATCAAGGGAAGTTGCTTACCCTTGAAAAATGGGCTGGGGCAGAAGGAGTTCGAGGAGTTTGCTTAGGTGAAGCCGATGGAGTTCTTTCAGTATCGCTTACTTCATCTACGGCTTGGTCAACATCCTCGCCGATTTCTTCTTCATCCAGAGCTTGTTCAATGGATGGATCTAGGGCAGGCAGATCATCAGTTGGCTTCGTTTTCTTTGACTTGACTTTCATCTTTGGAGCTTGAGCCGATGGATCTGCAGCCGATGACCTGGTTTTTCTCTTTTTACCGGTATCGGCTGGTTCTCTGCTGAGCCCTTGAAGAAGAGTTGAAGTCCTAGGACCACGATAGCCAATGACAGTGATGTGCACTAGGGTTCCCGATCTTCCGAAAGGTTCTGATAAACAACGATTTGGGTGGAGCCGTGACACAAATCGATCCGGCTTCTTGAACGCGCACACACTTGAGCCCCGCAATCGCAGCACCACGTCTCCTCTAGTTATCACCCGTGTTGAAACGTGGGTGACCTCGCTGAGAAGGCTAATCCCTGTTTGTGTAACATACTGAAAATTAGCTATTTTCTAATTATGCATCATGCCGCTTCTTATGTTTTTAATAACTTCCTAAACCTAGGAAAATATAATTAGTAGGACCTCCTAAAACTAATTTGCATAAAATCCCTCTCTGGTATTTAACTTCTTTTGTGTTTTTCATTTAAAGATATATTTGGTTAAATTAAGGTGTTTCTTGATTTGGTTTTAAATTAAAACCTTCTTTCGACAAAATTCCTCTTATTCAAATTTAGTTGAAAACCCTTTTCATTTGTATGAATTATGGTCCAAGAAAACCCTCCAAACCAACTATTTGAAATTCCAATTTTAATTGGAATTAATTGTCGACCCATCCTTTGATTCCAAACCTATCCTTAGTTCCCTTTACAAATCTCAAGTATCCAAATTCCTCCTTTCAATCTAGCCGCCAATTTAATTCCCGTGGCTTGATTTCCTCCTCGGCACAAGAATAATATTATTACAAATATTGCAAATATTGCTCTTGTGCTAAGAAGATATATTTCATCCTTCCATCCCAAATCCAAAACCTCTTTTAGCCCATAATTAATTCTAGATTTCCTACCACATATTTTGGGCTAAAATTTTATTTATTCCATTCCCTCCATTTTCCTCCCACATTCCCAAATATATATCTCTCTCCCCCATTTGAGTGCATCTATATAAATTCCACTATATTCCACTTCCAAAAATATTGCACTCAAATTAGAAAATATCTCTTTTGGAAATTATATCCATATATAATTTCCTTCCAAACTTTCCTATTCAAATTCTTTTCAAATATAAATCCTATTCAATTCCATTACCCAAACCCCCTTCAAAATTCAAAAACAGTTTCTATTCACTTTGGGCCGAAATCCTTTTTCTTCTCCCCTCAGCCCAAGCCGGCCCAAATCGACCCATAGCTGAGCCGCCTCCAGGTGCGCGTGTTGCACACGCGCACGACGCCGCCAACGCCTTCCGTCGCCGCTAAGAAACCGGCCGCCCGCCGTTCTCTCCACGCCGCCGCCGCCGTCAACTTGCCGACCACGCCAAGGCGTCGCCGTGCCGTGCCTCTCTACTGCCGCCGCCCAGCCATACGGCAGCCACCACGTGCAGGCGCCGCCGTCGCCATCCAATCAGAGAAGGAAGCTGGCGCTGTCTTTTCTTCCTTCACGACAGCGTCGCCGTGGCCGAGTCGATGACCGCCTCTACAACCGCCTTCGGCAACCGACCTCCGCGGCCTATAAATAGATGATGAGGTCGCCCCTTTTCCCCTCCACACCATCCGAGCTCTTCGAGCTCTGTCTTTCTCTCTCTCTTCCTCAAGACCGGCGGCCGCCACCGTCGGCCGATATCTCTCACCGGAGCACCACTAACCAAATCCTCTCACCACCAACCTTGCCTTACTCCGGCAAACCCATTTTTCCACTTTTCCCCTTCTCTTTCGTCCCATATCAAGCCCCACCGAAGCTCTCTCTCTCCTGCCGGTTCACGGTCTTGCGCTCGCCTTTCCGGCCATTCCCTTAACCCCCTTTGCCGACCACTTCCTTCCCTAGGTGTTCTGTACACGGGAACACCACTGGCCGCCGGCGTCGCTGCCTGTCCACTACCGGAGCCCCGACGCCCCTCTCCTCCTCCTCTCTGTTCGACTGAAGAGAAGAAGAAGGAAGAGGCGGGAAGAAGAAGAAGAGAAAGAAAAAGAAAAAGAAAAGCCTGACAGGTGGGTCCCCTACATAGTGTCTCTTCTTATTTTCTCTATTTAATTCAAAACCTATTATTTAGAAGCCCATATCTCCTAAACCGTAGATCCGATTACAGTCAAATTTGGACCTAAATTCATCTAAATTCAAAATCTACATTTTGATACCAAATTTGCTATTTTAATATTTTATTTGGATTTCCTTAAGTTATTTATGTCATTTGCTTTTCAAATATCTCCTTTTATTTCAAAATACCCTTTAGCCACTAAAAAGCCATTGGTTGGAACTTTACGCCTTCCATGGGGACGTTCGCACGGTCTATGGACCCCAACGTCGAACCGTTGGTTGTAAAGCTCGGCATAAACCAAACCCAAGGTCGAAGTGCTGCTCCTGGCACCGTACGCCTCGCTGCGTACAACGGTCGGAGCTTCACTATTCCCTTGACCTCCATAGCACGCTACACAGTTCGCTCTCAAGCTCTGTGCGATTCTAGTCACTCCGTCGCCACTCACGGTTGTCGGAGTAACACTTCCGCCCCACTAAACCTGTATAAACCTCCAATCCCTCTAGCCGATATGCTATCTGTCGATACCGGCTAGAGAAAATACCAAACCTAGTCATTATGCTCTAGCATCGACTAGCACGCAACCAAACCCTAGCTAACACGTTGCTAGTTAAAACCCAACCGTCATCCAAATATCCCACCTACCAATATTGCCTATCCACTATACTCAGCCACATACTCTCCTAGAATCTATACAGAGCCTAGCTGATATGCTTCTCTACTCCGCAGTCGGCTTAAATATAATCAAACCCTAGGTATTATACTACCTGAACCTACCACCAGCCAATACTAGCCATACATCAACTGAACCAGTTCAATTATCCAATATACATCCTATGCTTTCAGCAACCAAGCACTCACATAAAATATAAGCAACCTTAGTTGCCGGATCTCCTCTCCACCTTAGCCTCCAACCCTTTAGAATCC
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| CDS seq | MKVKSKKTKPTDDLPALDPSIEQALDEEEIGEDVDQAVDEALADLFSFDIKDYLDEETEEDTTSKSLVPLSDDVKKTLEDISHRLEASSLDNLVVNCGPIRTRLHEIQPLIPDELADVFTSAVYLEQHQFKLEKAKLRLAERRERKDIQVNRLLVHEEKSKLDQLSEGPIKSNIDRLEVRKIELLAQLEECNAELDMEHKKLADLPKSIEEQKARLKLAIKNVADLTKSLKVIPGTDTQDAQAIEEVEQIRQRVISAIQQYLSQ |
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| Protein seq | MKVKSKKTKPTDDLPALDPSIEQALDEEEIGEDVDQAVDEALADLFSFDIKDYLDEETEEDTTSKSLVPLSDDVKKTLEDISHRLEASSLDNLVVNCGPIRTRLHEIQPLIPDELADVFTSAVYLEQHQFKLEKAKLRLAERRERKDIQVNRLLVHEEKSKLDQLSEGPIKSNIDRLEVRKIELLAQLEECNAELDMEHKKLADLPKSIEEQKARLKLAIKNVADLTKSLKVIPGTDTQDAQAIEEVEQIRQRVISAIQQYLSQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsR527G1180002914.01 | OsR527G1180002914.01.T01 | Chr11 | 13213338 | 13217866 | - | IGDBv1 | ||
| CDS seq | ATGAAAGTCAAGTCAAAGAAAACGAAGCCAACTGATGATCTGCCTGCCCTAGATCCATCCATTGAACAAGCTCTGGATGAAGAAGAAATCGGCGAGGATGTTGACCAAGCCGTAGATGAAGCCTTAGCCGATCTGTTCTCTTTCGATATTAAAGACTATCTTGATGAAGAAACAGAAGAAGACACCACCAGCAAGTCTTTAGTTCCCTTGTCCGATGATGTGAAGAAAACCCTTGAAGACATCTCTCATCGGCTAGAGGCATCATCACTAGACAACTTGGTGGTAAACTGTGGGCCGATTAGAACTCGGTTACACGAGATCCAACCTCTAATCCCAGATGAGCTAGCCGATGTCTTCACTTCAGCTGTCTATCTTGAGCAGCATCAATTCAAGCTGGAAAAGGCCAAATTAAGACTAGCCGAACGTCGGGAGCGCAAGGACATTCAAGTCAATCGGCTGCTTGTGCACGAAGAGAAGTCCAAGCTTGATCAGCTATCTGAGGGCCCGATCAAGTCCAATATTGATCGGCTCGAAGTCCGTAAGATTGAGCTCTTGGCACAACTTGAAGAATGCAACGCCGAGCTGGATATGGAACATAAAAAGCTAGCCGATCTCCCAAAATCTATCGAAGAACAGAAGGCAAGACTAAAATTGGCCATCAAGAATGTTGCTGATCTCACCAAGTCTTTAAAAGTCATCCCTGGAACTGACACTCAAGATGCCCAAGCCATTGAAGAAGTAGAACAAATCAGGCAAAGGGTTATTTCGGCTATCCAGCAATATTTGTCTCAATGA
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| Protein seq | MKVKSKKTKPTDDLPALDPSIEQALDEEEIGEDVDQAVDEALADLFSFDIKDYLDEETEEDTTSKSLVPLSDDVKKTLEDISHRLEASSLDNLVVNCGPIRTRLHEIQPLIPDELADVFTSAVYLEQHQFKLEKAKLRLAERRERKDIQVNRLLVHEEKSKLDQLSEGPIKSNIDRLEVRKIELLAQLEECNAELDMEHKKLADLPKSIEEQKARLKLAIKNVADLTKSLKVIPGTDTQDAQAIEEVEQIRQRVISAIQQYLSQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g20000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0254000 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0288700 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | OsHZ_11g0135100 | SBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_11g0132600 | SBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_11g0130200 | SBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_11g0133900 | SBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1121484900.01 | SBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1135087200.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1131789400.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1133421600.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1125218700.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1180002650.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1180003395.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1122418000.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1120919800.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1180003088.01 | SBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0304892400.01 | SBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1133439800.01 | SBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1180002958.01 | SBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1180002352.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1180203563.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1121134500.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1122244700.01 | SBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1180002458.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1119919500.01 | SBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1223404000.01 | SBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1142462800.01 | SBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1129145600.01 | SBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1124579200.01 | SBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1120503400.01 | SBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1125088000.01 | SBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1127357400.01 | SBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0101141900.01 | SBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1180002400.01 | RBH | None | None | None |
