Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsR527G1122257800.01 | OGI:06087160 | 8/50 | Os XI-1B: R527 | R527 | SICAU | Chr11:13429564-13430184 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | 127518_R527_INS1105690,Basmati1_R527_INV1123530_1,Azucena_R527_INV1123980,II32_R527_DEL1120560_1,II32_R527_DEL1120570,KY131_R527_OTH1122310,TM_R527_DEL1118460,TM_R527_DEL1118620,NamRoo_R527_OTH1122910,
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| DNA seq | TCACACGTGACGTGAGTCCAAGGCCTTGACGGTGCCTTGTGGCTGTTTCTCGTGGTCGTCCAAGCGTTTCATGAGGAGGTCCAGCTTGGCAGCAAGTAACTCCGTCTCCTTGACGGTGTGCATGCCTCGCTGACGGGTCTGGAGTCGTTCCATGCTCCAACCCATATTGGAGACCATCTTCTCTATGAGTTCAACAGCTCCTTGAACCGTTTTAGAGAAGAAGGCTCCTCCAGCTGCCGCGTCCATGTGATCGCGGGACATTGGGTTGAGCCCATTGCAAAAGTTTTGCAGGATCAGCCAGTCATCCATCCCATGATGAGGATAGGCGGCCACGTACTCCTGTAGTCGTTCCCATGCTTCTGGAATGGACTCGTCCCTTGTCTGCTGGAAACTGGAAATTCGTCCACGAAGGACGTTGGTTTTGCCTATCGGGAATAACTTCGAGAGGAATGTCGTAGAGCATTTATCCCAGGTGTTGATAGCAGCACGGTTGGCATAGGACCACTGCTTCGCTCTCCTGAGGAGGGAGAACGGAAACAGCCGTAGCCTGACGGCATCGGGACTGACGCCCTTGATGGTGTACGTACTACATATCTCCAGGAATTGCTGCAGATGAGCGTT
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| CDS seq | NAHLQQFLEICSTYTIKGVSPDAVRLRLFPFSLLRRAKQWSYANRAAINTWDKCSTTFLSKLFPIGKTNVLRGRISSFQQTRDESIPEAWERLQEYVAAYPHHGMDDWLILQNFCNGLNPMSRDHMDAAAGGAFFSKTVQGAVELIEKMVSNMGWSMERLQTRQRGMHTVKETELLAAKLDLLMKRLDDHEKQPQGTVKALDSRHV |
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| Protein seq | NAHLQQFLEICSTYTIKGVSPDAVRLRLFPFSLLRRAKQWSYANRAAINTWDKCSTTFLSKLFPIGKTNVLRGRISSFQQTRDESIPEAWERLQEYVAAYPHHGMDDWLILQNFCNGLNPMSRDHMDAAAGGAFFSKTVQGAVELIEKMVSNMGWSMERLQTRQRGMHTVKETELLAAKLDLLMKRLDDHEKQPQGTVKALDSRHV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsR527G1122257800.01 | OsR527G1122257800.01.T01 | Chr11 | 13429564 | 13430184 | - | IGDBv1 | ||
| CDS seq | AACGCTCATCTGCAGCAATTCCTGGAGATATGTAGTACGTACACCATCAAGGGCGTCAGTCCCGATGCCGTCAGGCTACGGCTGTTTCCGTTCTCCCTCCTCAGGAGAGCGAAGCAGTGGTCCTATGCCAACCGTGCTGCTATCAACACCTGGGATAAATGCTCTACGACATTCCTCTCGAAGTTATTCCCGATAGGCAAAACCAACGTCCTTCGTGGACGAATTTCCAGTTTCCAGCAGACAAGGGACGAGTCCATTCCAGAAGCATGGGAACGACTACAGGAGTACGTGGCCGCCTATCCTCATCATGGGATGGATGACTGGCTGATCCTGCAAAACTTTTGCAATGGGCTCAACCCAATGTCCCGCGATCACATGGACGCGGCAGCTGGAGGAGCCTTCTTCTCTAAAACGGTTCAAGGAGCTGTTGAACTCATAGAGAAGATGGTCTCCAATATGGGTTGGAGCATGGAACGACTCCAGACCCGTCAGCGAGGCATGCACACCGTCAAGGAGACGGAGTTACTTGCTGCCAAGCTGGACCTCCTCATGAAACGCTTGGACGACCACGAGAAACAGCCACAAGGCACCGTCAAGGCCTTGGACTCACGTCACGTGTGA
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| Protein seq | NAHLQQFLEICSTYTIKGVSPDAVRLRLFPFSLLRRAKQWSYANRAAINTWDKCSTTFLSKLFPIGKTNVLRGRISSFQQTRDESIPEAWERLQEYVAAYPHHGMDDWLILQNFCNGLNPMSRDHMDAAAGGAFFSKTVQGAVELIEKMVSNMGWSMERLQTRQRGMHTVKETELLAAKLDLLMKRLDDHEKQPQGTVKALDSRHV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g51540 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0230600 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0281800 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | OsHZ_05g0093200 | SBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_05g0093300 | SBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_11g0101200 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_11g0101800 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | OsDGG1125189300.01 | SBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1233214300.01 | SBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1180003393.01 | SBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0621094600.01 | SBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0613276200.01 | SBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1234230500.01 | SBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1180203598.01 | SBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1224203900.01 | SBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1225359300.01 | SBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1232536400.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1119729100.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0918681600.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | TMG0204284300.01 | SBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1227003000.01 | SBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1222116700.01 | SBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0614077600.01 | SBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0511233700.01 | SBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0617639400.01 | SBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1231636300.01 | SBH | None | None | None |
