Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Basic Info

Gene ID	OGI # \| Score	Accession \| Assembly \| Annotation	Location	Links
OsR498G1271641400.01	OGI:12038580 \| 15/50	Os XI-1B: R498 \| R498 \| SICAU	Chr12:14653811-14654443	Homologues MicroCollinearity
Gene Symbol	-
Mutant	-
Stuctural Variations	117425_R498_INS1218820_1,127742_R498_DEL1209550_1,G630_R498_TRA1221600,G630_R498_TRA1224820,Tumba_R498_DEL1224060_1,MH63RS3_R498_INS1203050,MH63RS3_R498_TRA1217690,MH63RS3_R498_TRA1220940,YX1_R498_TRA1218860,G8_R498_TRA1220370,IR64_R498_TRA1220790,132278_R498_DEL1215720,DG_R498_DEL1215280,ZS97RS3_R498_INS1212380_1,LK638S_R498_TRA1235460,NamRoo_R498_TRA1220260,CN1_R498_TRA1219960,FS32_R498_TRA1210290_1,127564_R498_TRA1228370,117534_R498_TRA1230020,117534_R498_DEL1231760,Kosh_R498_DEL1212500,Kosh_R498_DEL1214780,127652_R498_INS1247810,D62_R498_TRA1211080_1,125619_R498_DEL1212520,125619_R498_DEL1217260,LJ_R498_INS1215630,Lemont_R498_TRA1235010,HZ_R498_TRA1212930,Y3551_R498_INS1203090,Y3551_R498_TRA1217630,Nipponbare_R498_TRA1225350,J4155S_R498_INS1228860,Azucena_R498_INS1216210,OglaRS2_R498_INS1228300,02428_R498_DEL1212790,02428_R498_INS1214990,R9311_R498_DEL1209740,R527_R498_TRA1220110,Y58S_R498_INS1228170,Basmati1_R498_INS1221220_1,II32_R498_DEL1209810,XL628S_R498_INS1212250,TM_R498_INS1227970,KY131_R498_INS1214810,G46_R498_INS1213220_1,125827_R498_TRA1229070,132424_R498_TRA1226920,J4155_R498_INS1227890,FH838_R498_INS1203050,FH838_R498_TRA1217870,FH838_R498_TRA1221200,127518_R498_TRA1225690,128077_R498_DEL1214120,128077_R498_DEL1230130,S548_R498_INS1232820,WSSM_R498_TRA1203100,DHX2_R498_DEL1214980, More
DNA seq	CTAGCGCCGCCGCCGCCGTGAATCCCGCCGCCTCCCGCCGTCCCCGCGCGCAATAAAGTGGGGGGAATTATTCCCCGTGATTCCCTCCCCCTTTCCCCCCATTTTTCCCTCCCTCTCTCCCTCGGATTCGTTTGGAAACCGTTCCCCTAACCTCGCCGGCGCCATTAATGGCGGCCGGGTCTCCCGCGCCCATTTCCCCCTCCTCCGGCCGCCCTCTCTCACTCCCAACCCTATATAAACCCTCCCCGAGCTCCCCACCACCGTTTCCGCCACTCGCCGCCCTCTCTTCCCGCCGGAATCGACCTCGCGCCGTCGCTCTCTCTCTCCGCCGTCGCCGCCGAGCTCCGGTCCGCCGCTGTTGTCGCCCCGGACCACCTCCCACCTCGGCGCCGCCTCCTTCGGCTTCGCCGCATCCTCACCGACCTCGTCCACCCCTCCGTTTCGCTCACCGACCGCCGGAACGCCGTCGACCCCGTTGACCCGAGCCGCGCCGCCGCCTTCCTCCACTCCGGTCGCCGTTTCCGTCGTCGCCGTCGACCCGGGGTGAGCCGTGGACCGCCGCTTCGTTTCCCCCTTTCCCTCCCCTCTCTCGGGCGCCGCTCCGCAGCGCCGGTGGTCGCCGGCGGCGACCAT More
CDS seq	MVAAGDHRRCGAAPERGEGKGETKRRSTAHPGSTATTETATGVEEGGGAARVNGVDGVPAVGERNGGVDEVGEDAAKPKEAAPRWEVVRGDNSGGPELGGDGGERERRREVDSGGKRGRRVAETVVGSSGRVYIGLGVREGGRRRGKWARETRPPLMAPARLGERFPNESEGEREGKMGGKGEGITGNNSPHFIARGDGGRRRDSRRRRR
Protein seq	MVAAGDHRRCGAAPERGEGKGETKRRSTAHPGSTATTETATGVEEGGGAARVNGVDGVPAVGERNGGVDEVGEDAAKPKEAAPRWEVVRGDNSGGPELGGDGGERERRREVDSGGKRGRRVAETVVGSSGRVYIGLGVREGGRRRGKWARETRPPLMAPARLGERFPNESEGEREGKMGGKGEGITGNNSPHFIARGDGGRRRDSRRRRR
Function	-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsR498G1271641400.01	OsR498G1271641400.01.t1	Chr12	14653811	14654443	-	IGDBv2
CDS seq	ATGGTCGCCGCCGGCGACCACCGGCGCTGCGGAGCGGCGCCCGAGAGAGGGGAGGGAAAGGGGGAAACGAAGCGGCGGTCCACGGCTCACCCCGGGTCGACGGCGACGACGGAAACGGCGACCGGAGTGGAGGAAGGCGGCGGCGCGGCTCGGGTCAACGGGGTCGACGGCGTTCCGGCGGTCGGTGAGCGAAACGGAGGGGTGGACGAGGTCGGTGAGGATGCGGCGAAGCCGAAGGAGGCGGCGCCGAGGTGGGAGGTGGTCCGGGGCGACAACAGCGGCGGACCGGAGCTCGGCGGCGACGGCGGAGAGAGAGAGCGACGGCGCGAGGTCGATTCCGGCGGGAAGAGAGGGCGGCGAGTGGCGGAAACGGTGGTGGGGAGCTCGGGGAGGGTTTATATAGGGTTGGGAGTGAGAGAGGGCGGCCGGAGGAGGGGGAAATGGGCGCGGGAGACCCGGCCGCCATTAATGGCGCCGGCGAGGTTAGGGGAACGGTTTCCAAACGAATCCGAGGGAGAGAGGGAGGGAAAAATGGGGGGAAAGGGGGAGGGAATCACGGGGAATAATTCCCCCCACTTTATTGCGCGCGGGGACGGCGGGAGGCGGCGGGATTCACGGCGGCGGCGGCGCTAG More
Protein seq	MVAAGDHRRCGAAPERGEGKGETKRRSTAHPGSTATTETATGVEEGGGAARVNGVDGVPAVGERNGGVDEVGEDAAKPKEAAPRWEVVRGDNSGGPELGGDGGERERRREVDSGGKRGRRVAETVVGSSGRVYIGLGVREGGRRRGKWARETRPPLMAPARLGERFPNESEGEREGKMGGKGEGITGNNSPHFIARGDGGRRRDSRRRRR More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	None	None	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os12g27550	SBH	0.000000	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	NA	NA	NA	NA	NA
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_12G0211700	SBH	0	0	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Zhenshan 97 \| ZS97RS3 \| HZAU	NA	NA	NA	NA	NA
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Os XI: R9311 \| R9311 \| AGIS	NA	NA	NA	NA	NA
Os XI-adm: HZ \| HZ \| PKU	NA	NA	NA	NA	NA
Os XI-adm: J4155S \| J4155S \| PKU	NA	NA	NA	NA	NA
Os XI-adm: LK638S \| LK638S \| PKU	NA	NA	NA	NA	NA
Os XI-adm: XL628S \| XL628S \| PKU	NA	NA	NA	NA	NA
Os GJ-temp: 02428 \| 02428 \| SICAU	Os02428G1280000474.01	SBH	None	None	None
Os cB: Basmati1 \| Basmati1 \| SICAU	OsBasmati1G1238404700.01	SBH	None	None	None
Os O.glaberrima: Ogla \| OglaRS2 \| DIADE	NA	NA	NA	NA	NA
Os XI-1A: CN1 \| CN1 \| SICAU	OsCN1G1234125700.01	RBH	None	None	None
Os XI-1A: D62 \| D62 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: DG \| DG \| SICAU	OsDGG1227952100.01	SBH	None	None	None
Os GJ-temp: DHX2 \| DHX2 \| SICAU	OsDHX2G1280002866.01	SBH	None	None	None
Os XI-adm: FH838 \| FH838 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: FS32 \| FS32 \| SICAU	OsFS32G1280002369.01	SBH	None	None	None
Os XI-1A: G46 \| G46 \| SICAU	OsG46G1223033600.01	SBH	None	None	None
Os XI-adm: G630 \| G630 \| SICAU	OsG630G1218937700.01	SBH	None	None	None
Os XI-1B: G8 \| G8 \| SICAU	OsG8G1280002979.01	SBH	None	None	None
Os XI-1A: II32 \| II32 \| SICAU	OsII32G1280002617.01	SBH	None	None	None
Os XI-1B: J4155 \| J4155 \| SICAU	OsJ4155G1280003382.01	SBH	None	None	None
Os GJ-temp: Kosh \| Kosh \| SICAU	OsKoshG1280002577.01	SBH	None	None	None
Os GJ-temp: KY131 \| KY131 \| SICAU	OsKY131G1280204047.01	RBH	None	None	None
Os GJ-trp: Lemont \| Lemont \| SICAU	OsLemontG1280003445.01	SBH	None	None	None
Os GJ-adm: LJ \| LJ \| SICAU	OsLJG1280002726.01	SBH	None	None	None
Os GJ-sbtrp: NamRoo \| NamRoo \| SICAU	OsNamRooG1280002709.01	RBH	None	None	None
Os XI-1B: R498 \| R498 \| SICAU	OsR498G0666443300.01	SBH	None	None	None
Os XI-1B: R527 \| R527 \| SICAU	OsR527G1280003239.01	SBH	None	None	None
Os XI-1B: S548 \| S548 \| SICAU	OsS548G1245840800.01	SBH	None	None	None
Os XI-2: TM \| TM \| SICAU	TMG1231441900.01	SBH	None	None	None
Os XI-3: Tumba \| Tumba \| SICAU	OsTumbaG1280002970.01	SBH	None	None	None
Os XI-adm: WSSM \| WSSM \| SICAU	OsWSSMG1280003493.01	SBH	None	None	None
Os XI-1B: Y3551 \| Y3551 \| SICAU	OsY3551G1280002885.01	SBH	None	None	None
Os XI-1B: Y58S \| Y58S \| SICAU	OsY58SG1280002652.01	RBH	None	None	None
Os XI-adm: YX1 \| YX1 \| SICAU	OsYX1G1280002602.01	SBH	None	None	None
Os GJ-temp: ZH11 \| ZH11 \| SICAU	OsZH11G1232234200.01	SBH	None	None	None

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