Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNamRooG1129602600.01 | OGI:11034110 | 29/50 | Os GJ-sbtrp: NamRoo | NamRoo | SICAU | Chr11:11709103-11712261 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | Nipponbare_NamRoo_OTH1107560,Nipponbare_NamRoo_INV1107530,G8_NamRoo_TRA1122510,G8_NamRoo_INS1126130,J4155_NamRoo_DEL1125000,J4155_NamRoo_DEL1125010,J4155_NamRoo_INS1127360,ZS97RS3_NamRoo_DEL1136710,ZS97RS3_NamRoo_INS1138140,R9311_NamRoo_TRA1127900,R9311_NamRoo_OTH1127910,R9311_NamRoo_INS1129280,R9311_NamRoo_DEL1129930,G630_NamRoo_DEL1124030,G630_NamRoo_INS1126580,G630_NamRoo_DEL1127200,FH838_NamRoo_TRA1129910,FH838_NamRoo_INS1132570,S548_NamRoo_INS1127590,S548_NamRoo_DEL1128270,LK638S_NamRoo_DEL1135570,LK638S_NamRoo_INS1137400,II32_NamRoo_INS1126000,II32_NamRoo_DEL1129260,II32_NamRoo_DEL1129270,R498_NamRoo_DEL1124430,R498_NamRoo_DEL1125160,R498_NamRoo_DEL1127660,125619_NamRoo_DEL1125560,125619_NamRoo_DEL1125570,125619_NamRoo_INS1125630_1,117534_NamRoo_DEL1118290,117534_NamRoo_DEL1121570,Y58S_NamRoo_INS1125930,Y58S_NamRoo_DEL1126520,127742_NamRoo_DEL1127860,127742_NamRoo_DEL1130710,127742_NamRoo_INS1131540,127742_NamRoo_DEL1132210,132424_NamRoo_DEL1120430,132424_NamRoo_DEL1126010,127652_NamRoo_INS1119790,127652_NamRoo_DEL1138480,LJ_NamRoo_OTH1105840,127518_NamRoo_TRA1123640,127518_NamRoo_DEL1127560,TM_NamRoo_DEL1125860,TM_NamRoo_DEL1125870,TM_NamRoo_DEL1127620,TM_NamRoo_DEL1127680,R527_NamRoo_INS1129530,R527_NamRoo_DEL1130150,Azucena_NamRoo_OTH1104550,Azucena_NamRoo_DEL1106370,YX1_NamRoo_INS1124810,YX1_NamRoo_DEL1125450,CN1_NamRoo_DEL1129010,CN1_NamRoo_DEL1129080,ZH11_NamRoo_OTH1105570,ZH11_NamRoo_DEL1106300,OglaRS2_NamRoo_DEL1125240,IR64_NamRoo_INS1124040,XL628S_NamRoo_DEL1136840,XL628S_NamRoo_DEL1136850,XL628S_NamRoo_INS1138670,02428_NamRoo_OTH1112040,Y3551_NamRoo_INS1127710,Y3551_NamRoo_DEL1128350,WSSM_NamRoo_INS1120020,WSSM_NamRoo_TRA1119490,G46_NamRoo_DEL1124840_1,G46_NamRoo_DEL1125370,G46_NamRoo_INS1128720,Basmati1_NamRoo_DEL1114660,J4155S_NamRoo_DEL1134870,J4155S_NamRoo_DEL1134880,J4155S_NamRoo_INS1136700,FS32_NamRoo_OTH1120320,127564_NamRoo_INS1125630,MH63RS3_NamRoo_DEL1127120,MH63RS3_NamRoo_INS1128260,MH63RS3_NamRoo_DEL1128870,132278_NamRoo_OTH1105610,128077_NamRoo_OTH1109440,DG_NamRoo_DEL1128210,DG_NamRoo_DEL1128220,DG_NamRoo_INS1130410,HZ_NamRoo_DEL1136340,HZ_NamRoo_DEL1136350,HZ_NamRoo_INS1138150,DHX2_NamRoo_OTH1106330,125827_NamRoo_DEL1126960,125827_NamRoo_DEL1126980,125827_NamRoo_INS1129590,125827_NamRoo_DEL1130210,Tumba_NamRoo_DEL1124590,Tumba_NamRoo_INS1126650,
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| DNA seq | CTAAGAGGGTCCAAGGGTCGTGCTCCACCAGATTGGGGCGCACCCCACATGGGCCCCACATGGGCCAGGGTCCCAAACAAAGTTACAAGCCCATTGGCCCAATACAGGAGACGCAGCACCTTGCTTTTGTGATTGCGGCCAAACGAGATAGATTTCCGAGATGAGGCTGGATCCGTTGGAAGGAGGACTTCGAGAGCTTTCCATCAAGTACTCACGGGCCCAAAACGGAGCACGTATGTAGATTTGGCGGCCGTTTGAAGTCAGCAATGTAACACGTGGCCGAATCAGATTGCAGCACATGGAGGACTTGATCTTGATGTCTTCTTGTTGATTCATGATGTGAGCAATGGTCGTATCCATAGTAGCCATGGTCACATCAGCTAATCTCTGCAAACAAATAATGTTCCAAGTACAAGTGGAAATATATTATTCTAAAATAGATATGCATTGCAAGCATAGTTAGTTCTCCTTTATTTTAGTTTATTGACGGTCAAAACTAGTCTATAACGACTGTCAACATCATTTGTAGCTAGTCTCTCCATGTCCCAATTCTCCACATCATTTGCATCTTCTCTTGCCTCTTACCATTTGCTTCTTAGTAGGATCAATCTCAGTTGCTGCTTTCTTTGCTTTAGATTTCCCATCGCCTTCTAGATAGCTATTTATCCTCACCTTCCTATACCTTCCTATTGTCTTTCTTGGAAGTGGAGCACCTACCATCCAGGGCAATTCCACTTGTGGCCAATGTGACTTGTCACCCAAAAGCTCAATCACCTTCCTATAAGCATTTCTGAACATTTCCACATAATAGTAAGCATTAACAAAATCTTCTAGGTTGACATCTAGTTGCAATGCATGCTAGCAAGGCTTGCCCATGTGCTGCCACTCCTCACAAGAGAAGTACTGAGCAAATGCCTTGACCACATTGTCAGGGTTATGTATAAAGCATACCCTCTATCCTATGAGTCATGAGAATTTACGAATACGGTATATCTTATGACATATGGAAAGGATACGTGTAAAAGAAGGAAATCAGTGAACTCATATCGGAAATATCCTTTACGAGTAGGACCATGTCAATATCTTACTCGGAGAAGAGAATGATTGTATTGTATCGTGTGGGGTCTGATGTCTCCAAGTTCTACTTGGTGTAATATACCCGAATTCTAGGATTAGACATTTCTTGTCAAAATAGTGGAAGCTAACTTTTCCATTCTTGGAGAGCCAAAAATTTTCATTTTTAACCTAGGAGTGGTCAATCTAACTTGAACCTAAATAAAATTTGAAAGCAAATTAAATTCTTTTCATTTGTAACCTAAGATAGAAAAATGCAACCATAGGTGTAAGCATGCATACTCACATTGGACATGGTTTAACCTGAGTCCTCTTTGTGAATTTGGATTTTTGTTTGCATTTCATATTAGGTCTCATGAACATGATTAAAAGATAACTTCACTAAGCAAAACCTAAGAACATTCATGAGTAATAATATTAAAGACATGAAAATAAAGTCAAATAATATCACCACAAGTCAACAGAAGTCTAATATACCTCTTGTAAAAATTTCTAGATACATTTATAAATTGGTATGCACATATAAAGAAAGATCTTGCTAATTATCTAAAATAATTTATGCAAGATAAAATCATGAAAAAATTCATGAAAGCACAAATCAATATTTTCAACTCACCGTAATTTTGGTACAAATTAATAACTAAATTTGTTACCTCAAATAAATAAGTCAAACCAGTCAAATAATAGACTAATTATAAACCTTAATCGGCTAAAATTTAATTCACCAAAATATACATTAAACTGCATGGAAGTGTATAAGGGAGATGATTTATTCAAATACTAAGTTATTTATCATGAATAAATATAATTTTTCCAGAATTTATTTCTTCTATTTAGGTTTCCTAAAAATTCAAACAGAGTTCTTCGGAACCCATCTTCTCCAATTACTGAGAGCAAACTACACATAATTTTTTAGTGCAACCAAAGAAAATGGAAACTATGTACATTCATCTATCTCCAGTAAAATCCACATGAATTTATCTGCTCCACACATTAACCTATGAATTAACAAAGTGAGAGAGAGAAATAAATCCTGAAAAATCATATAAAATCATTGTGCACTCAACCTCTCACCCATACCCCTCACTCTATCCTAGCCTATCACTTCCTGGACCCACCTAGCAGCCACCTTGACTGCTCCTCCTAAGGCCTCTCATAGTGCAAGCTATGGGGCCGTACCCCTAACCCAAAAAATTGGCCCAAAGACATCTATCCCACAGTGCAAGCACCCTAGTTGTGTTGTTTAATTGGATGAAGGTACTGTGTAAAGAAACCGAGCCCACAGTGGGGCGTTACCCTAGCCGCGTGGTCACGGGAGAGGAACGAAATTAATTTACTCACCTACCCTTCCAGCGACTTCTCCTCGCGCTCCCCTCCATCGCCCTTCGCCGCCTCGTAGTCCGCCGAACCCGCCGCTCCTCCTTCCCTTCCACCACCAGGCTCCGCTCCGGCCACTCGTACTTCTCATCAGCCGCAGCGCTCCGCTCTCTCTCTCACCTGTTCCATAGGCGCTGGCGTCGGGCCCCTCCTCTCTCGGCGGCGACGAGGAGGCGGAGCGAGGAGGACGGCGGCGGTGGAGCGGATCTGGAGCGGCCCGAGCTTCGCCCGTCCTAGGCGACGCCTTGCTCGCCCCAGCCGCCGCGTCGTCGAGGACTAGGAGCTCCGCGGTGATGGCGCTCATCTCCACCTTCTAGAAGAACCGGCGGCGCGGATCTGGAGCCCCGAGGACGCAGCCACCTCCTCACTCTGCCGACGACGAGGAGACGGAGCGTGGTGGTGGTGGTTGCCGCCGCGATCTGTTGTTTTGCTTCTTTTTTCTTTTTGATCTTGTGGTGGCAACAATAGTGTTTCTTGAATCCATATTCTTGAGTTCTTCCAATTCCCAAGATCCTCTGCCACATTTTTGCTTGCTGATTTTGAGGATTTTGCTTGGGCGGGAGAGGATTTAGGAGGGTGAATCGGGTATTTCGCTGGGAGGATTGGGTGCGAGGTCACGGGTCGGCGAAGCAACGCTATCCACAGCGCGCGTTCCTTCCGTTTTCTCCTCCGCCTGTGGACTCGCAAGAGTGAGGTTTCGCACGTCTC
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| CDS seq | MSAITAELLVLDDAAAGASKASPRTGEARAAPDPLHRRRPPRSASSSPPREEGPDASAYGTGERESGALRLMRSTSGRSGAWWWKGRRSGGFGGLRGGEGRWRGARGEVAGRVIELLGDKSHWPQVELPWMVGAPLPRKTIGRYRKVRINSYLEGDGKSKAKKAATEIDPTKKQMRLADVTMATMDTTIAHIMNQQEDIKIKSSMCCNLIRPRVTLLTSNGRQIYIRAPFWAREYLMESSRSPPSNGSSLISEIYLVWPQSQKQGAASPVLGQWACNFVWDPGPCGAHVGCAPIWWSTTLGPS |
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| Protein seq | MSAITAELLVLDDAAAGASKASPRTGEARAAPDPLHRRRPPRSASSSPPREEGPDASAYGTGERESGALRLMRSTSGRSGAWWWKGRRSGGFGGLRGGEGRWRGARGEVAGRVIELLGDKSHWPQVELPWMVGAPLPRKTIGRYRKVRINSYLEGDGKSKAKKAATEIDPTKKQMRLADVTMATMDTTIAHIMNQQEDIKIKSSMCCNLIRPRVTLLTSNGRQIYIRAPFWAREYLMESSRSPPSNGSSLISEIYLVWPQSQKQGAASPVLGQWACNFVWDPGPCGAHVGCAPIWWSTTLGPS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNamRooG1129602600.01 | OsNamRooG1129602600.01.T01 | Chr11 | 11709103 | 11712261 | - | IGDBv1 | ||
| CDS seq | ATGAGCGCCATCACCGCGGAGCTCCTAGTCCTCGACGACGCGGCGGCTGGGGCGAGCAAGGCGTCGCCTAGGACGGGCGAAGCTCGGGCCGCTCCAGATCCGCTCCACCGCCGCCGTCCTCCTCGCTCCGCCTCCTCGTCGCCGCCGAGAGAGGAGGGGCCCGACGCCAGCGCCTATGGAACAGGTGAGAGAGAGAGCGGAGCGCTGCGGCTGATGAGAAGTACGAGTGGCCGGAGCGGAGCCTGGTGGTGGAAGGGAAGGAGGAGCGGCGGGTTCGGCGGACTACGAGGCGGCGAAGGGCGATGGAGGGGAGCGCGAGGAGAAGTCGCTGGAAGGGTGATTGAGCTTTTGGGTGACAAGTCACATTGGCCACAAGTGGAATTGCCCTGGATGGTAGGTGCTCCACTTCCAAGAAAGACAATAGGAAGGTATAGGAAGGTGAGGATAAATAGCTATCTAGAAGGCGATGGGAAATCTAAAGCAAAGAAAGCAGCAACTGAGATTGATCCTACTAAGAAGCAAATGAGATTAGCTGATGTGACCATGGCTACTATGGATACGACCATTGCTCACATCATGAATCAACAAGAAGACATCAAGATCAAGTCCTCCATGTGCTGCAATCTGATTCGGCCACGTGTTACATTGCTGACTTCAAACGGCCGCCAAATCTACATACGTGCTCCGTTTTGGGCCCGTGAGTACTTGATGGAAAGCTCTCGAAGTCCTCCTTCCAACGGATCCAGCCTCATCTCGGAAATCTATCTCGTTTGGCCGCAATCACAAAAGCAAGGTGCTGCGTCTCCTGTATTGGGCCAATGGGCTTGTAACTTTGTTTGGGACCCTGGCCCATGTGGGGCCCATGTGGGGTGCGCCCCAATCTGGTGGAGCACGACCCTTGGACCCTCTTAG
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| Protein seq | MSAITAELLVLDDAAAGASKASPRTGEARAAPDPLHRRRPPRSASSSPPREEGPDASAYGTGERESGALRLMRSTSGRSGAWWWKGRRSGGFGGLRGGEGRWRGARGEVAGRVIELLGDKSHWPQVELPWMVGAPLPRKTIGRYRKVRINSYLEGDGKSKAKKAATEIDPTKKQMRLADVTMATMDTTIAHIMNQQEDIKIKSSMCCNLIRPRVTLLTSNGRQIYIRAPFWAREYLMESSRSPPSNGSSLISEIYLVWPQSQKQGAASPVLGQWACNFVWDPGPCGAHVGCAPIWWSTTLGPS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g22320 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0182300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0185800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0011720 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0011890 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0010860 | SBH | 0.000000 | 1.103935 | 2.037922 |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_11g0131500 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_11g0129200 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_11g0132500 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1121531000.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1135107400.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_028891 | SBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1131839800.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1133449400.01 | SBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1125078600.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1130008200.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1122661200.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1120947800.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1117325200.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1125306000.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1133591800.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1122371000.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1130943200.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1121179600.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1122290600.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1170645000.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1142534600.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1129193400.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1124629600.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1119538800.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1125140400.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1127513000.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1130112200.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
