Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0330300 | OGI:12064030 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr12:23392789-23394996 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | TTAAAACCTGGTTCTAGTAGGCACTAGATCTATATATTACATAACAAGGAAGTTTAGCATCAGGGGCACATAGATCACCTGCATCACAAAATGCACCACTAGCTACTTCCAGGTCAGTTCTTACTGATGCAGAAGCCACACTTGCACATTGCATACTGCTACATTTTTACATATATAATCAAACATAGGAGGATCAAGGATGCCTGCCTGCCTGGAACCTTTAGCCCAGTAGAACAAACCGGTCATCAACCTTCCCAATGACATGAACTGTCATGGTCACTCGCCTTGCGCCTTTCATCAGCTCGAAGATGCAGATGTACCCTTCTCGCAGCCTGTTCTCGCGGATGAACTTGATCCAGCGTTGGCAATTGAAGCCCCTGGTAGTGCTTGCATGGTAGTATTTGACATACCATTTCTCCTTTTTGTTTGGTCTCATCAGCAGGATTTCTTGTGATCTGCTGTCAAGATGATCAGCTGCAAATCCACTGGGGACGATCTGCGTCGAAAAGATTAAACTGGGTCAGCTCAAAGAGAACTTTTCTGCTCCCTATTAAACCAGAGAATTTTTACATGAAAGTTTATTCACTTTATATGACAATTTATAAGTTAACATGCGGAGATGCTGGAATTTTGTTTGATCATAGGAGAGATGAATAATTGGACTGACCAGGAGGCCCTTGCGATGAATTTGTGGCGCCTGCAGAACAGTCACAAATACAGGATTGCCTGGTTGCAGTGACACCAAACTGAATATCTCTTCACGTTCCTCGCCAGTTAGGTAATTGGCAAACCTCGAGTAGTAGTAGTCAGCATGTTCATAATCAGCATGCTCATCATCATCATCACTCTTCTCTTCCTCAATCATCTCATGTTTGACATGAGAGCGGCTGCTGTTTGGATCTTCAGGCTCCTTCCCTGTTGAAAATGGATCATCTTTATCTGTTAGCAAAATAAACAAGTAGAACATTCTTGGCTTCAATATCGTTTAAGAGTAATTCACAACATCACAATCTCAGAAGAACATTCTAAGGACACACTGCAAACTTGTGCTTACTTGGATTAGTCTTGGTTTTGCCATTCAATTTCTTTGAAGTAGAGGCCTTGTGAGGAGATCCAACTAGAAATGTTGATGGTGTGCTAGTATCTTCAGAATCACTTAAATGGTATTGCTCAGCATTCTGAGTCTGACCACCTATACTGTTCTTTTTACCAATAAAGAAGCAAGACACTTTCTCACAGCCACTTGCATCAAAGATTAGTACATCAAAGGAGAAGCTGCCATTGCAACGGCCATTGCAAGTGAAGAACAGGAGGTCATTCTCCTGCAATTCATGAGCCTTGGCAAAATCCTCCCATCCTGACATGAGGATCAGCTCATCAGCAACCTTTTCGACGCTGACACGCCATGTTTCGCCACTGGGTGCTTTCAGGTTGAACCCTTTGGTGATCTGACCACTGAATCTGTCCGCAACTTTCTCCGGTATGCTCTGAGATGAAAACAATAATCTGGTTAACTTCGTTAGATGATACTCCAACTATAGTTGGCATGTTGAATGTTGTGTCCAGATAACAGTGACTGAAAGTCTGAAATTCTACACAGAAAAACGCTGATTTTTGCAGGATGATTTTTGGAATGGAAATTTTTGCAGGATGATTAAACTTCTCTGCAATGCCACTTTGACATAAAAACTCTACTAGTCTACTCTATCCATGATCTAAGTTTAGATCCTTAATATGAAGTCCACACAGTACATCCTACTAATACCATTGCTTATCATCCTTTCAGTTATCACAAAACCTGAAGAAAAGATACTCGCAATGCCTTGAGCAAAAATCTCCTTTCATTGCTTATTTTGTTAACTTTGTTGGATGATAAATGCACTGATTTTCTTGTTTTGGTTAGCAGGATGAATGCCATGTCTAGTTATCAATGACTATAACAAAGTAGTCTACATCCCACGAATCTGCACTTAGATCCTTAATCTCTTCCTTCCAGTAACAGTACTCATAACAAGGTACAACACTCACCAAGACCACAAAATTTTAGCAGCTCCAAAATGACAAAAACCTGAAGAAAAGATACTTACAATGCCATGAGCAAAATCTCCAGTCATGAGCCTGAAGAAGCGAATCCTGCTCACATCCATGTGCTCCCTGTAGCAGTGCTCCTGCCACTCTCTGCAACTCTCACACCCCTTCTCACCCATC
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| CDS seq | MGEKGCESCREWQEHCYREHMDVSRIRFFRLMTGDFAHGISIPEKVADRFSGQITKGFNLKAPSGETWRVSVEKVADELILMSGWEDFAKAHELQENDLLFFTCNGRCNGSFSFDVLIFDASGCEKVSCFFIGKKNSIGGQTQNAEQYHLSDSEDTSTPSTFLVGSPHKASTSKKLNGKTKTNPRKEPEDPNSSRSHVKHEMIEEEKSDDDDEHADYEHADYYYSRFANYLTGEEREEIFSLVSLQPGNPVFVTVLQAPQIHRKGLLIVPSGFAADHLDSRSQEILLMRPNKKEKWYVKYYHASTTRGFNCQRWIKFIRENRLREGYICIFELMKGARRVTMTVHVIGKVDDRFVLLG |
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| Protein seq | MGEKGCESCREWQEHCYREHMDVSRIRFFRLMTGDFAHGISIPEKVADRFSGQITKGFNLKAPSGETWRVSVEKVADELILMSGWEDFAKAHELQENDLLFFTCNGRCNGSFSFDVLIFDASGCEKVSCFFIGKKNSIGGQTQNAEQYHLSDSEDTSTPSTFLVGSPHKASTSKKLNGKTKTNPRKEPEDPNSSRSHVKHEMIEEEKSDDDDEHADYEHADYYYSRFANYLTGEEREEIFSLVSLQPGNPVFVTVLQAPQIHRKGLLIVPSGFAADHLDSRSQEILLMRPNKKEKWYVKYYHASTTRGFNCQRWIKFIRENRLREGYICIFELMKGARRVTMTVHVIGKVDDRFVLLG |
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| Function | B3 domain-containing protein Os12g0592300 [UniProtKB/Swiss-Prot:Q2QMT2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0330300 | OsMH63_12T0330300.1 | Chr12 | 23392789 | 23394996 | - | maker | ||
| CDS seq | ATGGGTGAGAAGGGGTGTGAGAGTTGCAGAGAGTGGCAGGAGCACTGCTACAGGGAGCACATGGATGTGAGCAGGATTCGCTTCTTCAGGCTCATGACTGGAGATTTTGCTCATGGCATTAGCATACCGGAGAAAGTTGCGGACAGATTCAGTGGTCAGATCACCAAAGGGTTCAACCTGAAAGCACCCAGTGGCGAAACATGGCGTGTCAGCGTCGAAAAGGTTGCTGATGAGCTGATCCTCATGTCAGGATGGGAGGATTTTGCCAAGGCTCATGAATTGCAGGAGAATGACCTCCTGTTCTTCACTTGCAATGGCCGTTGCAATGGCAGCTTCTCCTTTGATGTACTAATCTTTGATGCAAGTGGCTGTGAGAAAGTGTCTTGCTTCTTTATTGGTAAAAAGAACAGTATAGGTGGTCAGACTCAGAATGCTGAGCAATACCATTTAAGTGATTCTGAAGATACTAGCACACCATCAACATTTCTAGTTGGATCTCCTCACAAGGCCTCTACTTCAAAGAAATTGAATGGCAAAACCAAGACTAATCCAAGGAAGGAGCCTGAAGATCCAAACAGCAGCCGCTCTCATGTCAAACATGAGATGATTGAGGAAGAGAAGAGTGATGATGATGATGAGCATGCTGATTATGAACATGCTGACTACTACTACTCGAGGTTTGCCAATTACCTAACTGGCGAGGAACGTGAAGAGATATTCAGTTTGGTGTCACTGCAACCAGGCAATCCTGTATTTGTGACTGTTCTGCAGGCGCCACAAATTCATCGCAAGGGCCTCCTGATCGTCCCCAGTGGATTTGCAGCTGATCATCTTGACAGCAGATCACAAGAAATCCTGCTGATGAGACCAAACAAAAAGGAGAAATGGTATGTCAAATACTACCATGCAAGCACTACCAGGGGCTTCAATTGCCAACGCTGGATCAAGTTCATCCGCGAGAACAGGCTGCGAGAAGGGTACATCTGCATCTTCGAGCTGATGAAAGGCGCAAGGCGAGTGACCATGACAGTTCATGTCATTGGGAAGGTTGATGACCGGTTTGTTCTACTGGGCTAA
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| Protein seq | MGEKGCESCREWQEHCYREHMDVSRIRFFRLMTGDFAHGISIPEKVADRFSGQITKGFNLKAPSGETWRVSVEKVADELILMSGWEDFAKAHELQENDLLFFTCNGRCNGSFSFDVLIFDASGCEKVSCFFIGKKNSIGGQTQNAEQYHLSDSEDTSTPSTFLVGSPHKASTSKKLNGKTKTNPRKEPEDPNSSRSHVKHEMIEEEKSDDDDEHADYEHADYYYSRFANYLTGEEREEIFSLVSLQPGNPVFVTVLQAPQIHRKGLLIVPSGFAADHLDSRSQEILLMRPNKKEKWYVKYYHASTTRGFNCQRWIKFIRENRLREGYICIFELMKGARRVTMTVHVIGKVDDRFVLLG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0869585 | 0.0797065 | 1.345864 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0592300 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g40120 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0592300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0019250 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0019360 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0019690 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0019010 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018620 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0329900 | RBH | 0.0214435 | 0 | 0.01045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018490 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0360100 | RBH | 0.245347 | 0.0275115 | 8.239713 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018730 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018960 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0018880 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0018910 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019090 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018740 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018430 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C12g39989 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_12g0219000 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_12g0226500 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_12g0217100 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_12g0223800 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1224720000.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1239111000.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_032565 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1234658600.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1237195000.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1228508200.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1234720000.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1233132400.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1227440600.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1223586800.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1219319400.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1228815200.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1237093200.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1224311600.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1235729800.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1219410400.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1225297200.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1226723400.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1233630000.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1222012400.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1224881600.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1246645200.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1232782000.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1228206800.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1223101800.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1228791400.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1231163400.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1233196400.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1233251400.01 | RBH | None | None | None |
