Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_06G0479900 | OGI:06085710 | 12/50 | Minghui 63 | MH63RS3 | HZAU | Chr06:31310524-31313853 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | NamRoo_MH63RS3_OTH0645620,NamRoo_MH63RS3_INV0645510,02428_MH63RS3_INV0642710_1,Basmati1_MH63RS3_INS0654660_1,Basmati1_MH63RS3_INS0654490_1,Y58S_MH63RS3_INS0624320_1,Y58S_MH63RS3_INS0624150_1,Lemont_MH63RS3_OTH0646280,Lemont_MH63RS3_INV0646210_1,128077_MH63RS3_INS0641020_1,128077_MH63RS3_INS0640860,127652_MH63RS3_TRA0646330_1,127652_MH63RS3_INS0646380,S548_MH63RS3_INV0629000_1,R9311_MH63RS3_INV0627450_1,CN1_MH63RS3_INV0629590,DG_MH63RS3_INV0626630,DHX2_MH63RS3_OTH0639410,DHX2_MH63RS3_DEL0639470,DHX2_MH63RS3_TRA0639400,127518_MH63RS3_TRA0624910_1,127518_MH63RS3_INS0624950,XL628S_MH63RS3_TRA0624770_1,XL628S_MH63RS3_INS0624620_1,IR64_MH63RS3_INV0630980_1,HZ_MH63RS3_INV0628200_1,125619_MH63RS3_OTH0625670,125619_MH63RS3_INV0625620,Tumba_MH63RS3_INS0625890,Tumba_MH63RS3_TRA0625860_1,Kosh_MH63RS3_INS0641860,132424_MH63RS3_INV0626690_1,WSSM_MH63RS3_OTH0625380,WSSM_MH63RS3_INV0625290,LK638S_MH63RS3_INS0627030_1,R527_MH63RS3_INV0602780_1,G8_MH63RS3_INV0625270_1,TM_MH63RS3_INV0623660_1,TM_MH63RS3_OTH0623770,127564_MH63RS3_INS0624290,117534_MH63RS3_OTH0642630,117534_MH63RS3_INV0642520_1,J4155S_MH63RS3_INS0634040_1,J4155S_MH63RS3_INS0633870,132278_MH63RS3_INS0645500,J4155_MH63RS3_INS0634060_1,J4155_MH63RS3_INS0633890,117425_MH63RS3_INV0646220,117425_MH63RS3_OTH0646230,YX1_MH63RS3_INS0630100,Azucena_MH63RS3_INS0648680_1,Azucena_MH63RS3_INS0648550,G630_MH63RS3_INV0614340_1,D62_MH63RS3_INV0628810_1,OglaRS2_MH63RS3_OTH0661280,OglaRS2_MH63RS3_INV0661220_1,FH838_MH63RS3_OTH0630010,FH838_MH63RS3_INV0629980,Nipponbare_MH63RS3_DEL0640200,127742_MH63RS3_INV0626420_1,LJ_MH63RS3_OTH0641840,LJ_MH63RS3_INV0641700,
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| DNA seq | CTAGCTAAGAAGAACTAAAAGGAAAAGAGCTGCTGCTCTTGTTCGCCAGTAATCTGCATCAATGGATAGTGTATACTGATCATTCCGGCGTTGACATGGCGAAAAGTATTTTGTCAATAGGAAGGAGGAGAATCACACGCCAAGTGCATGCATGATTTTTCAATTCATTTCAAGGCAAAGTTTCTAGACAAAGCTAGGTTCTCGATAAGCCGGCCACTTTGATTTGATGACAATTAGGTTAATTAAGGCAATCTTCTTGCCTTTCCTTTTCTATCAATAGTGGACAAAGGTGAGAGCTGATATTTATTATATCCTGTTAGCCATTCAGAAAGTGCTTTCCATGACATTCCAAACGAAATGATATTTTTCTCATGTTCAGTCGGCCATGCATCTTCAGTTTAACTAAACAAGACAAAAAAAAAACTTATATCCAACATAAGATATATATGCCCTATGAGCATAAACGCACTCAGTGATAAAATATACTAGTAAGAGGTAAAGCTAAGGTGAATGCTGACAAGAGACAAGCCCATCTGTCCCTCAAAGATAACAAATACTACTACTGACTGAAACAAAATTAAAGCATGATAGCCACTTCTGAATTTCTGAATGGCTGAAGGGGAAAAAAATTGAACAGGATACTGCATGCTGATCGAGTTGAACAAGTAAGAAAAGGTGTTCATCTTTGCAGAGACAAGATCTAACACATTTCTAACTGCAGAGGTAGTTCATAGCATCCATCGATCACCTACACACAATATCCTCTCTCATGCCTGACCCCTGCACAAACGCACACCGGATTGCAAATACACATAATTTAGATCTTTCTAATGATTTTGTATCGTCAAATAATCTTGCTTGTTTTGGTCGACCTTCAGAATTGAGTTGATGAAGTTCGTCGCAGTGAGCTCTTTGTAGGCATCACCAGTGCAGCAAATAGAAGATGAATTACAAGACTTACCTGTGATGAATTACAAGACTTACCAGGCATCACCTGTCAAATAATCCATTGATGAAGTTAGTTTAGAAACTCAAGAGAGTACCGTTATAAATGCAGACTTAACATCAAGGCTAGCACAAATAGAAGATGAATTACAAGACTTACCTGTGACAATGAAGGTAAGTTGAAAAGTTGAAGGATATTACTGTTATTGTCAAGGACATGGGAGGACCAGAGAGCTTACCCAGTCATTACAATTTAGAGATGAACCACAGATTTGCATATGGAAAATGATATAAATGATATAAGAGGTTTGCAAGATGATCTGAGATCTAGCAATGAGAATTTGCTAAGAGAAGAAAGACTGATATAAGAGCTTTAGTCTATCCTTGCAAGCCTGACTTCGAAACTTAGTCAAAAGAGTATGGCCGTGCTTTTCAATTTCTTATGTAGTCTTAGCTGCCTCCAATTTGTTCACTTGTTGGATAGATTAGGTAACATAAATTTGATTGATTTTCCTGATGATCATAGATTTGTTCACCTCCTCCGCCATCTTGTGCCTGGCGCCGCCTCCGTCTTCGGTTTGCAAACGTGAACACTGGCATCACCTACATGAAAAATCAAATGGTTAATGGTGTGCAACACTGTCAACTTTAAGGTGAATTTGTGTCAACAAAATTTCAGTCAAGCTGCACAAAAGATTCAAAAGTCCCTGAAATAAATTGAGATAACAAACAATCCTCCATGCATAACAGTATTGAGTACTGGCCCCATTCGAGTTTAAGATAAAAGATTAAGTTCGGACAGGTAAAACGAGAAAATCATTAACATCTCACTAATTAAGGTTTAATTATTTTAAAATTGAAAAAAAGATTTATCTTATAATTAAAGCTTCTATATAAATTTTTTTCGTTCGAAATATACAGTTCAACAGTTTAAAAAAACGAATTTATAAAAATCTAGGTAAAATCTGTATCTTAATCAGAAAAAGAAAAATAGAGGCTGAAGAAGCCTTGAGAGAGCAGTAGAGTATGGCACTGGGATGATGCCAAACTGCTTTCAGAACCGATTCACTGCTGCTGTTGGCATCTGCAGATTTGATGAGTTCAGCTCCAAAATGAAATCTGCATAAGCAAAGCATCATGAGTTCTGAAAAGCGAAATGTTTTTTTTTAAAAAATCTTACAGATATGAACTGTATTACAAGCAGCTGCGAAGCCACAAACCTATAGCTCTGGCAAATCCATCTGGGCAGCACCGAGTCGCCGGCGCGTGCTGCGTGGCGGCGGCAACGCCGGGAGGGACGAGGCGGGAGGATGAGAGCACCACGGCAATCCTCTGCACCGATGAGATGATGCTGCACATGTACTGCTGCGCCATGGCGGGCACGCTGCCCTGCAGGTGGCTCTCGAACGCGAACTGGAACGCGATCGTCATCACCGCCTTGGAGCTCGCCGCTGCTATTGATGCCGCTGATCCTGCTCCATGGCGTCGCTGCTTCGAGCATGGAAGCGAGATCTAGCATGCAGTTCGAGCTAGATGTGTCCTAACATTTGCAAGGAAAGAAAATCCAGAAGAATTATGTTTTTTATAGCATAAAAATTTTAGAAAATTTGATTCGAAATGCTAGTGTATTATCTAATTGTGTGAGATTTACTTACAGAGGAGAATCTATAGGGATGATGTAGAAACCGGAAGGCAGCAGCGGAGAATCATCACTGAACGATGCATCGATGGGTGCAAAGATTAGCTCTGAACATGTTCCTGCACTGCTCTCCTCTACTCCATTGTACATCTGCCATTGCAATCAGGCCAAGAACACAAGTTTTACAGAGGAAAAAAGAAAATGATTCTTCAACTGGTGATAAGTTTCATGAATCAAGAAGTCACCTGCAAGAGGAACAGATCACGGTGCACCAGTGTATCTTGGTAGTTTCTGGTGTTTCCTAGCTTGATAACTTCCAGGAACTGAAACAGTAGATGGTTGCACCAAAACATCGAGCAGGAAAACAGAATTGGACAGGACCTTTTTTGTAACCGACAGACAGTAGAAGATGGACTTACCTCTGCAGGTTCAAAAGTGTGTGCTAAAGGAAGTATGACCTGACCACTGAATCCTCCAAGACGAGACATGGGTAAATTGCAGAAGTTTGGTTTCATCGTCAGCCCATTGTGACTGGTGTTCGCGCAAAAATTGCAGTAGTGATGGAGGAGAGACATCCTAGCAAACAGCAGAAGAAATATTGTATGAAAAATATTGGCAATTACAAAACAAACAAAAAGAAAGTACTAATTCTAGTTTCATAGTGAAGCTAACCTGCAACAGCATGGATGCCTTGGCACAAAGAACACCGGTACTGACAATAGTGAGTCCACTGCTGAATGTTGCAT
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| CDS seq | ATGCAACATTCAGCAGTGGACTCACTATTGTCAGTACCGGTGTTCTTTGTGCCAAGGCATCCATGCTGTTGCAGGATGTCTCTCCTCCATCACTACTGCAATTTTTGCGCGAACACCAGTCACAATGGGCTGACGATGAAACCAAACTTCTGCAATTTACCCATGTCTCGTCTTGGAGGATTCAGTGGTCAGGTCATACTTCCTTTAGCACACACTTTTGAACCTGCAGAGTTCCTGGAAGTTATCAAGCTAGGAAACACCAGAAACTACCAAGATACACTGGTGCACCGTGATCTGTTCCTCTTGCAGATGTACAATGGAGTAGAGGAGAGCAGTGCAGGAACATGTTCAGAGCTAATCTTTGCACCCATCGATGCATCGTTCAGTGATGATTCTCCGCTGCTGCCTTCCGGTTTCTACATCATCCCTATAGATTCTCCTCTCTCGAACTGCATGCTAGATCTCGCTTCCATGCTCGAAGCAGCGACGCCATGGAGCAGGATCAGCGGCATCAATAGCAGCGGCGAGCTCCAAGGCGGTGATGACGATCGCGTTCCAGTTCGCGTTCGAGAGCCACCTGCAGGGCAGCGTGCCCGCCATGGCGCAGCAGTACATGTGCAGCATCATCTCATCGGTGCAGAGGATTGCCGTGGTGCTCTCATCCTCCCGCCTCGTCCCTCCCGGCGTTGCCGCCGCCACGCAGCACGCGCCGGCGACTCGGTGCTGCCCAGATGGATTTGCCAGAGCTATAGATTTCATTTTGGAGCTGAACTCATCAAATCTGCAGATGCCAACAGCAGCAGTGAATCGGTTCTGAAAGCAGTTTGGCATCATCCCAGTGCCATACTCTACTGCTCTCTCAAGGTGATGCCAGTGTTCACGTTTGCAAACCGAAGACGGAGGCGGCGCCAGGCACAAGATGGCGGAGGAGATTACTGGCGAACAAGAGCAGCAGCTCTTTTCCTTTTAGTTCTTCTTAGCTAG
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| Protein seq | MQHSAVDSLLSVPVFFVPRHPCCCRMSLLHHYCNFCANTSHNGLTMKPNFCNLPMSRLGGFSGQVILPLAHTFEPAEFLEVIKLGNTRNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFSDDSPLLPSGFYIIPIDSPLSNCMLDLASMLEAATPWSRISGINSSGELQGGDDDRVPVRVREPPAGQRARHGAAVHVQHHLIGAEDCRGALILPPRPSRRCRRHAARAGDSVLPRWICQSYRFHFGAELIKSADANSSSESVLKAVWHHPSAILYCSLKVMPVFTFANRRRRRRQAQDGGGDYWRTRAAALFLLVLLS |
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| Function | Homeobox-leucine zipper protein HOX29 [UniProtKB/Swiss-Prot:A2WLR5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_06G0479900 | OsMH63_06T0479900.1 | Chr06 | 31310524 | 31313853 | - | maker | ||
| CDS seq | ATGCAACATTCAGCAGTGGACTCACTATTGTCAGTACCGGTGTTCTTTGTGCCAAGGCATCCATGCTGTTGCAGGATGTCTCTCCTCCATCACTACTGCAATTTTTGCGCGAACACCAGTCACAATGGGCTGACGATGAAACCAAACTTCTGCAATTTACCCATGTCTCGTCTTGGAGGATTCAGTGGTCAGGTCATACTTCCTTTAGCACACACTTTTGAACCTGCAGAGTTCCTGGAAGTTATCAAGCTAGGAAACACCAGAAACTACCAAGATACACTGGTGCACCGTGATCTGTTCCTCTTGCAGATGTACAATGGAGTAGAGGAGAGCAGTGCAGGAACATGTTCAGAGCTAATCTTTGCACCCATCGATGCATCGTTCAGTGATGATTCTCCGCTGCTGCCTTCCGGTTTCTACATCATCCCTATAGATTCTCCTCTCTCGAACTGCATGCTAGATCTCGCTTCCATGCTCGAAGCAGCGACGCCATGGAGCAGGATCAGCGGCATCAATAGCAGCGGCGAGCTCCAAGGCGGTGATGACGATCGCGTTCCAGTTCGCGTTCGAGAGCCACCTGCAGGGCAGCGTGCCCGCCATGGCGCAGCAGTACATGTGCAGCATCATCTCATCGGTGCAGAGGATTGCCGTGGTGCTCTCATCCTCCCGCCTCGTCCCTCCCGGCGTTGCCGCCGCCACGCAGCACGCGCCGGCGACTCGGTGCTGCCCAGATGGATTTGCCAGAGCTATAGATTTCATTTTGGAGCTGAACTCATCAAATCTGCAGATGCCAACAGCAGCAGTGAATCGGTTCTGAAAGCAGTTTGGCATCATCCCAGTGCCATACTCTACTGCTCTCTCAAGGTGATGCCAGTGTTCACGTTTGCAAACCGAAGACGGAGGCGGCGCCAGGCACAAGATGGCGGAGGAGATTACTGGCGAACAAGAGCAGCAGCTCTTTTCCTTTTAGTTCTTCTTAGCTAG
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| Protein seq | MQHSAVDSLLSVPVFFVPRHPCCCRMSLLHHYCNFCANTSHNGLTMKPNFCNLPMSRLGGFSGQVILPLAHTFEPAEFLEVIKLGNTRNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFSDDSPLLPSGFYIIPIDSPLSNCMLDLASMLEAATPWSRISGINSSGELQGGDDDRVPVRVREPPAGQRARHGAAVHVQHHLIGAEDCRGALILPPRPSRRCRRHAARAGDSVLPRWICQSYRFHFGAELIKSADANSSSESVLKAVWHHPSAILYCSLKVMPVFTFANRRRRRRQAQDGGGDYWRTRAAALFLLVLLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.3555285 | 12.751713 | 17.006265 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g50679 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0029450 | SBH | 0.000000 | 3.194318 | 3.662488 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0029250 | SBH | 0.197496 | 0.999850 | 1.389304 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0029460 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0029370 | SBH | 3.500009 | 0.031318 | 5.294333 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0028740 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0462900 | SBH | 2.3962595 | 9.0691345 | 10.97311 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0029350 | SBH | 0.207276 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0029440 | SBH | 0.185216 | 2.430055 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0028930 | SBH | 1.172194 | 8.175653 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0029680 | SBH | 0.000000 | 0.000000 | 0.203284 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0029210 | RBH | 0.000000 | 0.059728 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G029120 | SBH | 0.119635 | 1.984937 | 1.994878 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0029280 | SBH | 1.419197 | 17.154709 | 7.117213 |
| Os XI: R9311 | R9311 | AGIS | R9311C06g24670 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_06g0337600 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_06g0354600 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_06g0327700 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_06g0343000 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0623774000.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_021137 | SBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0616921200.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0618727100.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0614903200.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0617285000.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0612423000.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0611218300.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0611217100.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0616830300.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | TMG0618453700.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0613930800.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0611219900.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0615624000.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0616087800.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0614717600.01 | RBH | None | None | None |
