Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Basic Info

Gene ID	OGI # \| Score	Accession \| Assembly \| Annotation	Location	Links
OsMH63_04G0382900	OGI:04074430 \| 2/50	Minghui 63 \| MH63RS3 \| HZAU	Chr04:26127932-26128169	Homologues MicroCollinearity
Gene Symbol	-
Mutant	-
Stuctural Variations	NamRoo_MH63RS3_DEL0454190,NamRoo_MH63RS3_DEL0461140,02428_MH63RS3_INS0455230,Basmati1_MH63RS3_INS0450200,Y58S_MH63RS3_DEL0427980,Y58S_MH63RS3_INS0437770,Lemont_MH63RS3_INS0446590,128077_MH63RS3_INS0444560,127652_MH63RS3_DEL0437000,R9311_MH63RS3_INS0432460,ZH11_MH63RS3_DEL0450050,ZH11_MH63RS3_INS0453170,DHX2_MH63RS3_INS0451950,KY131_MH63RS3_INS0451420,Kosh_MH63RS3_DEL0449800,Kosh_MH63RS3_INS0453320,117534_MH63RS3_INS0447660,132278_MH63RS3_DEL0458670,117425_MH63RS3_INS0451500,Azucena_MH63RS3_INS0445280,OglaRS2_MH63RS3_INS0446080,Nipponbare_MH63RS3_INS0451450,LJ_MH63RS3_INS0450270, More
DNA seq	ATGGCGATCAGCCTCCCAGTCTGGGTTATTAAGGCCATTGACAATAAGCGCCGCGCCTTCCTGTGGACAGATACGGACTCAGCCCATGGTGGGCAGTGTCAGGTGTTCTGGACGAATGTTTGTCGCTCCAAAACCGGTGGTGAGTTGGGGATCACTGACCTCAGGTTGGCAGGGTTTGCCCTACGTGTTCGCTGGCTCTGGCTTCAGCGCTCAGGGCACCTGTCACGCCCCGAACTAG
CDS seq	MAISLPVWVIKAIDNKRRAFLWTDTDSAHGGQCQVFWTNGLPYVFAGSGFSAQGTCHAPN
Protein seq	MAISLPVWVIKAIDNKRRAFLWTDTDSAHGGQCQVFWTNGLPYVFAGSGFSAQGTCHAPN
Function	-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsMH63_04G0382900	OsMH63_04T0382900.1	Chr04	26127932	26128169	+	maker
CDS seq	ATGGCGATCAGCCTCCCAGTCTGGGTTATTAAGGCCATTGACAATAAGCGCCGCGCCTTCCTGTGGACAGATACGGACTCAGCCCATGGTGGGCAGTGTCAGGTGTTCTGGACGAATGGTTTGCCCTACGTGTTCGCTGGCTCTGGCTTCAGCGCTCAGGGCACCTGTCACGCCCCGAACTAG
Protein seq	MAISLPVWVIKAIDNKRRAFLWTDTDSAHGGQCQVFWTNGLPYVFAGSGFSAQGTCHAPN

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0363895	0	0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	NA	NA	NA	NA	NA
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Minghui 63 \| MH63RS3 \| HZAU	NA	NA	NA	NA	NA
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_04G0382100	RBH	0.099203	4.07646	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Os XI: R9311 \| R9311 \| AGIS	NA	NA	NA	NA	NA
Os XI-adm: HZ \| HZ \| PKU	NA	NA	NA	NA	NA
Os XI-adm: J4155S \| J4155S \| PKU	NA	NA	NA	NA	NA
Os XI-adm: LK638S \| LK638S \| PKU	NA	NA	NA	NA	NA
Os XI-adm: XL628S \| XL628S \| PKU	NA	NA	NA	NA	NA
Os GJ-temp: 02428 \| 02428 \| SICAU	NA	NA	NA	NA	NA
Os cB: Basmati1 \| Basmati1 \| SICAU	NA	NA	NA	NA	NA
Os O.glaberrima: Ogla \| OglaRS2 \| DIADE	NA	NA	NA	NA	NA
Os XI-1A: CN1 \| CN1 \| SICAU	OsCN1G0413394100.01	SBH	None	None	None
Os XI-1A: D62 \| D62 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: DG \| DG \| SICAU	OsDGG0407720500.01	SBH	None	None	None
Os GJ-temp: DHX2 \| DHX2 \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: FH838 \| FH838 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: FS32 \| FS32 \| SICAU	OsFS32G0407707100.01	SBH	None	None	None
Os XI-1A: G46 \| G46 \| SICAU	OsG46G0407674100.01	SBH	None	None	None
Os XI-adm: G630 \| G630 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: G8 \| G8 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: II32 \| II32 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: J4155 \| J4155 \| SICAU	OsJ4155G0409864900.01	SBH	None	None	None
Os GJ-temp: Kosh \| Kosh \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: KY131 \| KY131 \| SICAU	NA	NA	NA	NA	NA
Os GJ-trp: Lemont \| Lemont \| SICAU	NA	NA	NA	NA	NA
Os GJ-adm: LJ \| LJ \| SICAU	NA	NA	NA	NA	NA
Os GJ-sbtrp: NamRoo \| NamRoo \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: R498 \| R498 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: R527 \| R527 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: S548 \| S548 \| SICAU	NA	NA	NA	NA	NA
Os XI-2: TM \| TM \| SICAU	NA	NA	NA	NA	NA
Os XI-3: Tumba \| Tumba \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: WSSM \| WSSM \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: Y3551 \| Y3551 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: Y58S \| Y58S \| SICAU	OsY58SG0409389500.01	SBH	None	None	None
Os XI-adm: YX1 \| YX1 \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: ZH11 \| ZH11 \| SICAU	NA	NA	NA	NA	NA

Custom TreePlot