Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Basic Info

Gene ID	OGI # \| Score	Accession \| Assembly \| Annotation	Location	Links
OsLima_11g0011790	OGI:11050840 \| 12/50	LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	Chr11:12731599-12731868	Homologues MicroCollinearity
Gene Symbol	-
Mutant	-
Stuctural Variations	G630_127564_DEL1147450,II32_127564_DEL1151200,II32_127564_TRA1120680,II32_127564_INS1120740_1,II32_127564_DEL1120600,DG_127564_OTH1119900,DG_127564_INV1119640,WSSM_127564_OTH1114740,XL628S_127564_INV1125090,ZS97RS3_127564_INV1126520,G8_127564_DEL1112650,G8_127564_OTH1112790,J4155S_127564_INV1123510,127518_127564_TRA1116990,127518_127564_TRA1117070,J4155_127564_INV1114750,Basmati1_127564_DEL1123820,LJ_127564_INV1119520,G46_127564_INV1117220,Tumba_127564_DEL1140220,LK638S_127564_INV1124970,Lemont_127564_OTH1123520,Lemont_127564_INV1123450,D62_127564_DEL1145520,125619_127564_INV1115110,S548_127564_INV1115870,IR64_127564_OTH1113700,IR64_127564_INV1113450,R527_127564_INV1113370,FH838_127564_OTH1120150,FH838_127564_INV1120020,117534_127564_DEL1149590,132278_127564_DEL1150910,132278_127564_OTH1121130,R498_127564_INV1114840,128077_127564_DEL1122340,128077_127564_DEL1152960,CN1_127564_OTH1121330,CN1_127564_INV1121210,TM_127564_DEL1150960,TM_127564_OTH1120190,125827_127564_OTH1121150,HZ_127564_INV1124650, More
DNA seq	atggttggtggcggcgcaggcggcggcggcgaggctggcgacggcggccaggagttggaggcggcggcggccatggcggtggtggttccggtgaactccggtgagggcaacgggcctggtaagcatcagggaaggaaggggagcgcggTggtggcggcaactcggcctggggcggtcgggagcggcggcgcgccgttcggctggcggcggccgaacagagggcgatgccgggaggcggcaccggtggcattccggcgacggattggatag
CDS seq	MVGGGAGGGGEAGDGGQELEAAAAMAVVVPVNSGEGNGPGKHQGRKGSAVVAATRPGAVGSGGAPFGWRRPNRGRCREAAPVAFRRRIG
Protein seq	MVGGGAGGGGEAGDGGQELEAAAAMAVVVPVNSGEGNGPGKHQGRKGSAVVAATRPGAVGSGGAPFGWRRPNRGRCREAAPVAFRRRIG
Function	-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLima_11g0011790	OsLima_11g0011790.01	Chr11	12731599	12731868	+	NAM
CDS seq	-
Protein seq	MVGGGAGGGGEAGDGGQELEAAAAMAVVVPVNSGEGNGPGKHQGRKGSAVVAATRPGAVGSGGAPFGWRRPNRGRCREAAPVAFRRRIG

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	NA	NA	NA	NA	NA
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_11g0011670	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_11g0011630	RBH	0.000000	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_11g0023370	RBH	0.0	0.0	0.000000
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_11g0011360	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Minghui 63 \| MH63RS3 \| HZAU	NA	NA	NA	NA	NA
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_11g0011580	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	NA	NA	NA	NA	NA
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_11g0011660	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_11g0011310	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_11g0011620	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_11G023530	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Os XI: R9311 \| R9311 \| AGIS	NA	NA	NA	NA	NA
Os XI-adm: HZ \| HZ \| PKU	NA	NA	NA	NA	NA
Os XI-adm: J4155S \| J4155S \| PKU	NA	NA	NA	NA	NA
Os XI-adm: LK638S \| LK638S \| PKU	NA	NA	NA	NA	NA
Os XI-adm: XL628S \| XL628S \| PKU	NA	NA	NA	NA	NA
Os GJ-temp: 02428 \| 02428 \| SICAU	NA	NA	NA	NA	NA
Os cB: Basmati1 \| Basmati1 \| SICAU	NA	NA	NA	NA	NA
Os O.glaberrima: Ogla \| OglaRS2 \| DIADE	NA	NA	NA	NA	NA
Os XI-1A: CN1 \| CN1 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: D62 \| D62 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: DG \| DG \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: DHX2 \| DHX2 \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: FH838 \| FH838 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: FS32 \| FS32 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: G46 \| G46 \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: G630 \| G630 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: G8 \| G8 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: II32 \| II32 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: J4155 \| J4155 \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: Kosh \| Kosh \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: KY131 \| KY131 \| SICAU	NA	NA	NA	NA	NA
Os GJ-trp: Lemont \| Lemont \| SICAU	NA	NA	NA	NA	NA
Os GJ-adm: LJ \| LJ \| SICAU	NA	NA	NA	NA	NA
Os GJ-sbtrp: NamRoo \| NamRoo \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: R498 \| R498 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: R527 \| R527 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: S548 \| S548 \| SICAU	NA	NA	NA	NA	NA
Os XI-2: TM \| TM \| SICAU	NA	NA	NA	NA	NA
Os XI-3: Tumba \| Tumba \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: WSSM \| WSSM \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: Y3551 \| Y3551 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: Y58S \| Y58S \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: YX1 \| YX1 \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: ZH11 \| ZH11 \| SICAU	NA	NA	NA	NA	NA

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