Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLK638S_11g0129300 | OGI:11034570 | 41/50 | Os XI-adm: LK638S | LK638S | PKU | Chr11:13084801-13086779 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | G8_LK638S_INV1108820,II32_LK638S_DEL1110570,II32_LK638S_DEL1110660,FS32_LK638S_INS1112950,CN1_LK638S_INV1115870_4,G630_LK638S_DEL1117780,125827_LK638S_INV1117740_14,ZH11_LK638S_INV1121360,DHX2_LK638S_INV1120190,127742_LK638S_INV1121090,FH838_LK638S_INV1116000,DG_LK638S_INV1113040_1,Tumba_LK638S_INV1113910,WSSM_LK638S_INV1113450,D62_LK638S_OTH1112490,R9311_LK638S_INV1120880,G46_LK638S_DEL1112180,G46_LK638S_DEL1112310,G46_LK638S_DEL1112320,127652_LK638S_DEL1125550,132278_LK638S_INV1122200,R527_LK638S_INV1123920,S548_LK638S_INV1117570,IR64_LK638S_INV1108770_1,128077_LK638S_INV1120800_2,Lemont_LK638S_INV1124160,02428_LK638S_INV1119420,MH63RS3_LK638S_INV1122150,
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| DNA seq | TCAACCACACAGGGAGGGCATCTTGAAGGAAAAGAACGAGGGCAGGTGCCCGGTCCTCCTGATGTAGTCCGCCTTCTGCGTGGTTCTAGCGGCGTGCTCGTTAAGCTTAGCCTCCGCGGTCGCCCGCTTCTCCTCGGCCATCCGCCGCGCAGCCGCCAGCTTGTTGGCCAGCTTCTCGTGCGCCCGTGCTTTCATCTGTTCTGCCTTCATCTGGAAAAGTTTTTGTTTGAGTAAGCTGGACAGATGCATTCGTTCCACATAGTAATGCTACAGAATATTTAAATAGACATCGAACTTAAAGTGCTAATTATATTAAAAAAATATTAATTGGATTAATACCATTACAAATTTAACTAATTAAAAAAATACCATTACTAACAGGATCATTAGATTCTTTGCAGACATATATACTCAGCAATTTGTGAGCTCAAATTTATGATTTCTGACAACGTTGTGTACAGGGTTGGAGACCATTACTGCTAAGGTGAATTAAAGTGGTCTGGCCTGCAGTAACATCAGGACAACTACTTTCCTGGCTTTCTAATACCCTAGGAGGCCTCTTTTAGTTCCCACGTAAAAAATTATTCTATCACATCCAATATATTGACACATACATGGAGTATTAAATATAGAAAAAAACTAATTACACAGATTACGTATAAATTGCGAGACGAATCTTTTAAGCCTAACTGCTCCATGATTTAACAATTGTGGTGCTACAATAAATATTTGCTACTGAAGAATTAATTAGTCTTAATAAATTTGTCTTGCAGTTTACAAGCGAAATCTGTAATTTCTTTTGTTATTAGTCTACGTTTAATACTTTAAATGTGTGTCCGTATATCCGATGTGACACAGCCAAACTTTTCATCCGTGGAACTAAACAAGGACAGAGTATATTGCTGTGACACTGATAGGAGCAATCAAAATCCTGTGTGATTCAAGCAGTTTGGTACGCATTGGTAGTGAAAATGTAACAAATTTTACTACGGACCGAGAAAATGGATTTATGCAAACCATACCTCTATTTTCTTCATTTCCAGCTCAGCTTTTCTCTTCTCGTGGTTCTCCCATGCTTGTATCTTCATCTCTTCACGCTTGTACCTGCAATTATAGAAAAGATGGGCGAATCAAATCTTCCAGATCTGAAGAAAACGGTCAAATGCTAGAAAGATTCGTTCGCACCTCGCCGTGAATTTGGCCCGCTCGGCCTCGTCCCAGGCCACGGCGCGGGACTCGAGCCCGGTCGTCGTGCTATACGCATGGTTGCCGAACCCGCCGCTACTACTCTCGTCCACCGCACAGCCCCCGCCGAAGCCGCCGCCGTCGCTAACACTGCCTACCGCCACCGGCTCGGCCGTCCTGGACTCGACCACGGCGGTAACGCCCACGGCCACGTCGTACCGCCGCCTGCCGGGCGTAGACGGCCGCGACGGTACGGGGCTCCGCGACACGGGCGTGGACGCCCGCAGCGGAGTGGCGGACCTGGACGGCTCCTTGCTGGCGATGGGGGTCATCTCCGTGCCCATGTCCCGCAGGCAGACCGACCGGAGCACCGCCGCGGGGGAGCCGTGCTGCGGTTGGACCATGCAGTAGTCGATCTTCTTCGTCTCACTCACGTCGTCGGCGGCGGCTTCACCCAGCTGCGGTGGCGTCGGGGGAGCGGCCACCAGGTTGTACTCCAGCGCCCCGTCCACGCTGCTGCAGGACACGCGGCCGTTCTGGGAGGACGAGCTCAGAAGGCGCCGATCGTCGGCGTTGGAGTTCCTTGGCCTCACCTTGCCGCTGTGGATCCCGTCAACGCCGCCGCCTCCGCCGTTGGACAGGCTAACAAGCCACTTCTGCGCGTCGTCCCACTTGGAAGGCGTCGGCTTCGGCCTTGATGCCGGATTGTTCTTGCGCTGCGGCCGCCCATTCGACTCGCCATGGATGCTGTGGCTGTAGCACTCCTTATCATCCACCGCCCGCATTGCTTGCAT
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| CDS seq | MQAMRAVDDKECYSHSIHGESNGRPQRKNNPASRPKPTPSKWDDAQKWLVSLSNGGGGGVDGIHSGKVRPRNSNADDRRLLSSSSQNGRVSCSSVDGALEYNLVAAPPTPPQLGEAAADDVSETKKIDYCMVQPQHGSPAAVLRSVCLRDMGTEMTPIASKEPSRSATPLRASTPVSRSPVPSRPSTPGRRRYDVAVGVTAVVESRTAEPVAVGSVSDGGGFGGGCAVDESSSGGFGNHAYSTTTGLESRAVAWDEAERAKFTARYKREEMKIQAWENHEKRKAELEMKKIEMKAEQMKARAHEKLANKLAAARRMAEEKRATAEAKLNEHAARTTQKADYIRRTGHLPSFFSFKMPSLCG |
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| Protein seq | MQAMRAVDDKECYSHSIHGESNGRPQRKNNPASRPKPTPSKWDDAQKWLVSLSNGGGGGVDGIHSGKVRPRNSNADDRRLLSSSSQNGRVSCSSVDGALEYNLVAAPPTPPQLGEAAADDVSETKKIDYCMVQPQHGSPAAVLRSVCLRDMGTEMTPIASKEPSRSATPLRASTPVSRSPVPSRPSTPGRRRYDVAVGVTAVVESRTAEPVAVGSVSDGGGFGGGCAVDESSSGGFGNHAYSTTTGLESRAVAWDEAERAKFTARYKREEMKIQAWENHEKRKAELEMKKIEMKAEQMKARAHEKLANKLAAARRMAEEKRATAEAKLNEHAARTTQKADYIRRTGHLPSFFSFKMPSLCG |
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| Function | Remorin 4.1 [UniProtKB/Swiss-Prot:Q7XII4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLK638S_11g0129300 | OsLK638S_11g0129300.10 | Chr11 | 13084801 | 13086779 | - | . | ||
| CDS seq | ATGCAAGCAATGCGGGCGGTGGATGATAAGGAGTGCTACAGCCACAGCATCCATGGCGAGTCGAATGGGCGGCCGCAGCGCAAGAACAATCCGGCATCAAGGCCGAAGCCGACGCCTTCCAAGTGGGACGACGCGCAGAAGTGGCTTGTTAGCCTGTCCAACGGCGGAGGCGGCGGCGTTGACGGGATCCACAGCGGCAAGGTGAGGCCAAGGAACTCCAACGCCGACGATCGGCGCCTTCTGAGCTCGTCCTCCCAGAACGGCCGCGTGTCCTGCAGCAGCGTGGACGGGGCGCTGGAGTACAACCTGGTGGCCGCTCCCCCGACGCCACCGCAGCTGGGTGAAGCCGCCGCCGACGACGTGAGTGAGACGAAGAAGATCGACTACTGCATGGTCCAACCGCAGCACGGCTCCCCCGCGGCGGTGCTCCGGTCGGTCTGCCTGCGGGACATGGGCACGGAGATGACCCCCATCGCCAGCAAGGAGCCGTCCAGGTCCGCCACTCCGCTGCGGGCGTCCACGCCCGTGTCGCGGAGCCCCGTACCGTCGCGGCCGTCTACGCCCGGCAGGCGGCGGTACGACGTGGCCGTGGGCGTTACCGCCGTGGTCGAGTCCAGGACGGCCGAGCCGGTGGCGGTAGGCAGTGTTAGCGACGGCGGCGGCTTCGGCGGGGGCTGTGCGGTGGACGAGAGTAGTAGCGGCGGGTTCGGCAACCATGCGTATAGCACGACGACCGGGCTCGAGTCCCGCGCCGTGGCCTGGGACGAGGCCGAGCGGGCCAAATTCACGGCGAGGTACAAGCGTGAAGAGATGAAGATACAAGCATGGGAGAACCACGAGAAGAGAAAAGCTGAGCTGGAAATGAAGAAAATAGAGATGAAGGCAGAACAGATGAAAGCACGGGCGCACGAGAAGCTGGCCAACAAGCTGGCGGCTGCGCGGCGGATGGCCGAGGAGAAGCGGGCGACCGCGGAGGCTAAGCTTAACGAGCACGCCGCTAGAACCACGCAGAAGGCGGACTACATCAGGAGGACCGGGCACCTGCCCTCGTTCTTTTCCTTCAAGATGCCCTCCCTGTGTGGTTGA
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| Protein seq | MQAMRAVDDKECYSHSIHGESNGRPQRKNNPASRPKPTPSKWDDAQKWLVSLSNGGGGGVDGIHSGKVRPRNSNADDRRLLSSSSQNGRVSCSSVDGALEYNLVAAPPTPPQLGEAAADDVSETKKIDYCMVQPQHGSPAAVLRSVCLRDMGTEMTPIASKEPSRSATPLRASTPVSRSPVPSRPSTPGRRRYDVAVGVTAVVESRTAEPVAVGSVSDGGGFGGGCAVDESSSGGFGNHAYSTTTGLESRAVAWDEAERAKFTARYKREEMKIQAWENHEKRKAELEMKKIEMKAEQMKARAHEKLANKLAAARRMAEEKRATAEAKLNEHAARTTQKADYIRRTGHLPSFFSFKMPSLCG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0011630 | RBH | 0.0 | 0.0 | 1.410442 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0011670 | RBH | 0.0 | 2.224598 | 0.356339 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0011620 | RBH | 0.0 | 2.479095 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0011320 | RBH | 0.0 | 0.485630 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0011780 | RBH | 0.0 | 3.028011 | 1.685184 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0186800 | RBH | 3.315764 | 1.8638015 | 4.20105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0011640 | RBH | 0.0 | 0.560085 | 0.084947 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0011730 | RBH | 0.0 | 0.349711 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_Ung0001450 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020300 | SBH | 0.0 | 3.511809 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011370 | RBH | 0.0 | 0.0 | 0.171542 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0011560 | RBH | 0.0 | 4.560825 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011510 | RBH | 0.0 | 9.908525 | 0.258963 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011460 | RBH | 0.0 | 4.398961 | 1.169770 |
| Os XI: R9311 | R9311 | AGIS | R9311C11g36636 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_11g0133900 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_11g0131600 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_11g0132700 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1121576500.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1135112200.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1131875700.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1134810200.01 | SBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1125121500.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1130040700.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1129512300.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1122709900.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1120969900.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1117325800.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1125341700.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1134686400.01 | SBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1122356200.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1118681600.01 | SBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1121215500.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0508544900.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0033909600.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1122258300.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1142577500.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1129289100.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1124663100.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1119611700.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1125142000.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1127514400.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1131009400.01 | SBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1128396100.01 | RBH | None | None | None |
