Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsJ4155_11g0131900 | OGI:11034520 | 4/50 | Os XI-adm: J4155S | J4155S | PKU | Chr11:13126095-13126783 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | R9311_J4155S_DEL1120870_1,R9311_J4155S_INV1120440,FH838_J4155S_INV1115790,CN1_J4155S_INV1116140_3,R498_J4155S_DEL1114750_1,R498_J4155S_INV1114250,YX1_J4155S_DEL1114550,125827_J4155S_INV1117920_23,R527_J4155S_DEL1122290,R527_J4155S_INV1121790,II32_J4155S_DEL1110880,II32_J4155S_DEL1110970,127742_J4155S_DEL1120420,127742_J4155S_INV1120040,G8_J4155S_INV1108760,S548_J4155S_DEL1117840,S548_J4155S_INV1117400,MH63RS3_J4155S_DEL1120970_1,MH63RS3_J4155S_INV1120540,132278_J4155S_INV1122200,Lemont_J4155S_INV1124010,117534_J4155S_DEL1117180,117534_J4155S_INV1116100,Tumba_J4155S_DEL1114810,Tumba_J4155S_INV1114240,WSSM_J4155S_INV1113030,02428_J4155S_INV1119650,IR64_J4155S_INV1108700_1,128077_J4155S_INV1120260_2,ZH11_J4155S_INV1121220,G630_J4155S_DEL1116740,G46_J4155S_DEL1112270,G46_J4155S_DEL1112410,G46_J4155S_DEL1112440,DHX2_J4155S_INV1119360,DG_J4155S_INV1113150_1,132424_J4155S_OTH1118680,
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| DNA seq | ATGCCGGCGGCGAGCAAGCAGAGGATGCGGACCCACCTCCACCGCCCTACCCACCACTGGATCCGTCGTCGCCGTCGCTGAGCCCCCCGCGGTCACTGTCGTCCAGCCCCCCGCGGTCACCGAGCCGAGCCCCCTGCGGTCACCGTCACCGAGCCCCCCTGGCCACCGTCATCGAGCCCCCCGTGGTCACTGTCATCTAGCCCCCCTGCGGTCGCCATTGTTGAGCCTCCCGCAGTCGCCGTCGCCGAGCCCCCCACGGTCGCCTAGCCGAGCCCCCCGTGGTTGCCGTCGCTGAGCACCCGTGGCCGCGGTCGTGGTCGTCGTCGTCGAGCCCCCCGCAGTCGCCGTCGGCGAGCCTCCCGCGGCCGCCGTCGCCGAGTCCCCGCGGCCATCGAGCCGAGCCCCCCGTGGTTGCCGCCGTCGTCGAGCCCACCACGGCCGCCATCGCCGAGCCCGCCGCGGCCGCAGTCGCCGTCGACGTCGTTGAGCCCGCCCGCGGTCGCCGTCGACGTTGCCGAGCCAGCCGGTGTCTACCACTGCTCCTGAGGGCGACTATGGTGAGCGCGCAGGCCGGCTCCGAGCTCGAGCAGGGCGAGCGCACAAGCAAGACGTCATCACACCGTTCGCTCGTCCCAACTGGGACGAGTTCGTCCGCCAGAATTTCCCGGATCGGTTGGTCCCGGATCTGA
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| CDS seq | MPAASKQRMRTHLHRPTHHWIRPEPPVVAVAEHPWPRSWSSSSSPPQSPSASLPRPPSPSPRGHRAEPPVVAAVVEPTTAAIAEPAAAAVAVDVVEPARGRRRRCRASRCLPLLLRATMVSAQAGSELEQGERTSKTSSHRSLVPTGTSSSARISRIGWSRI |
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| Protein seq | MPAASKQRMRTHLHRPTHHWIRPEPPVVAVAEHPWPRSWSSSSSPPQSPSASLPRPPSPSPRGHRAEPPVVAAVVEPTTAAIAEPAAAAVAVDVVEPARGRRRRCRASRCLPLLLRATMVSAQAGSELEQGERTSKTSSHRSLVPTGTSSSARISRIGWSRI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsJ4155_11g0131900 | OsJ4155_11g0131900.10 | Chr11 | 13126095 | 13126783 | + | . | ||
| CDS seq | ATGCCGGCGGCGAGCAAGCAGAGGATGCGGACCCACCTCCACCGCCCTACCCACCACTGGATCCGTCCCGAGCCCCCCGTGGTTGCCGTCGCTGAGCACCCGTGGCCGCGGTCGTGGTCGTCGTCGTCGAGCCCCCCGCAGTCGCCGTCGGCGAGCCTCCCGCGGCCGCCGTCGCCGAGTCCCCGCGGCCATCGAGCCGAGCCCCCCGTGGTTGCCGCCGTCGTCGAGCCCACCACGGCCGCCATCGCCGAGCCCGCCGCGGCCGCAGTCGCCGTCGACGTCGTTGAGCCCGCCCGCGGTCGCCGTCGACGTTGCCGAGCCAGCCGGTGTCTACCACTGCTCCTGAGGGCGACTATGGTGAGCGCGCAGGCCGGCTCCGAGCTCGAGCAGGGCGAGCGCACAAGCAAGACGTCATCACACCGTTCGCTCGTCCCAACTGGGACGAGTTCGTCCGCCAGAATTTCCCGGATCGGTTGGTCCCGGATCTGA
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| Protein seq | MPAASKQRMRTHLHRPTHHWIRPEPPVVAVAEHPWPRSWSSSSSPPQSPSASLPRPPSPSPRGHRAEPPVVAAVVEPTTAAIAEPAAAAVAVDVVEPARGRRRRCRASRCLPLLLRATMVSAQAGSELEQGERTSKTSSHRSLVPTGTSSSARISRIGWSRI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | OsHZ_11g0134300 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_11g0133100 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: FH838 | FH838 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: Kosh | Kosh | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | NA | NA | NA | NA | NA |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | NA | NA | NA | NA | NA |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
