Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Basic Info

Gene ID	OGI # \| Score	Accession \| Assembly \| Annotation	Location	Links
OsHZ_11g0135200	OGI:11041495 \| 2/50	Os XI-adm: HZ \| HZ \| PKU	Chr11:13258519-13258829	Homologues MicroCollinearity
Gene Symbol	-
Mutant	-
Stuctural Variations	Y58S_HZ_INV1124570,132278_HZ_INV1122880,132278_HZ_OTH1123000,S548_HZ_OTH1114940,S548_HZ_INV1114790,G630_HZ_OTH1117030,LJ_HZ_TRA1124020,02428_HZ_DEL1118820,02428_HZ_OTH1119260,02428_HZ_INV1119060,132424_HZ_INV1116940,R498_HZ_DEL1112950,R498_HZ_OTH1113070,R498_HZ_DEL1112970,R498_HZ_INV1113000,FS32_HZ_OTH1113010,G8_HZ_INV1106000,125827_HZ_INV1117210_26,FH838_HZ_INV1112560,117534_HZ_OTH1117270,117534_HZ_INV1116560,WSSM_HZ_INV1106430,ZH11_HZ_INV1121860,ZH11_HZ_OTH1121990,R527_HZ_OTH1122000,R527_HZ_INV1121830,DHX2_HZ_OTH1120670,DHX2_HZ_INV1120470,CN1_HZ_INV1115770,Lemont_HZ_DEL1124730,Lemont_HZ_INV1124960,Lemont_HZ_INS1125000,Basmati1_HZ_TRA1127610,YX1_HZ_OTH1111590,127742_HZ_OTH1119480,127742_HZ_INV1119360,MH63RS3_HZ_OTH1120170,MH63RS3_HZ_INV1120030,127564_HZ_INV1115600,G46_HZ_DEL1110820,G46_HZ_DEL1110830,127652_HZ_INV1127370,DG_HZ_INV1109920_1,128077_HZ_DEL1123330,128077_HZ_OTH1121850,D62_HZ_OTH1112480,D62_HZ_INV1112190,Y3551_HZ_INV1115710,II32_HZ_DEL1109490,II32_HZ_DEL1109620,IR64_HZ_INV1108700_1,R9311_HZ_OTH1119790,R9311_HZ_INV1119670,Tumba_HZ_OTH1114910,Tumba_HZ_INV1114700, More
DNA seq	ATGGTGCTGCTGCTCATAGTCCATACCATCAGCTTGAGTCCCCAAGCATTGGCCAGCGTGGCATGGCAACTGGGAGGAGACAACCATCGGTGGCTCGGACGGCGGGGCAATAGGGAGGAGGAGGCCTTGGCGGCTCGGTGAATGGCCATTGGCGGCAGCAGCGGCAGCGCTACATGAGGACGGTGGAGGAGGGGGCCATGAGGAGACGGTGTATGCTCGGAGGAGGAGGTGGAGGAGTCGATGAGGAAGAAGAGGCGGCGGCGGCGGCGCCGACACACGGCGTGCTACGCAGAGCGGAAGATAAGGAGTGA
CDS seq	MGGGGLGGSVNGHWRQQRQRYMRTVEEGAMRRRCMLGGGGGGVDEEEEAAAAAPTHGVLRRAEDKE
Protein seq	MGGGGLGGSVNGHWRQQRQRYMRTVEEGAMRRRCMLGGGGGGVDEEEEAAAAAPTHGVLRRAEDKE
Function	-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsHZ_11g0135200	OsHZ_11g0135200.10	Chr11	13258519	13258829	+	.
CDS seq	ATGGGAGGAGGAGGCCTTGGCGGCTCGGTGAATGGCCATTGGCGGCAGCAGCGGCAGCGCTACATGAGGACGGTGGAGGAGGGGGCCATGAGGAGACGGTGTATGCTCGGAGGAGGAGGTGGAGGAGTCGATGAGGAAGAAGAGGCGGCGGCGGCGGCGCCGACACACGGCGTGCTACGCAGAGCGGAAGATAAGGAGTGA More
Protein seq	MGGGGLGGSVNGHWRQQRQRYMRTVEEGAMRRRCMLGGGGGGVDEEEEAAAAAPTHGVLRRAEDKE

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	None	None	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	NA	NA	NA	NA	NA
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Minghui 63 \| MH63RS3 \| HZAU	NA	NA	NA	NA	NA
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Zhenshan 97 \| ZS97RS3 \| HZAU	NA	NA	NA	NA	NA
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Os XI: R9311 \| R9311 \| AGIS	NA	NA	NA	NA	NA
Os XI-adm: HZ \| HZ \| PKU	NA	NA	NA	NA	NA
Os XI-adm: J4155S \| J4155S \| PKU	NA	NA	NA	NA	NA
Os XI-adm: LK638S \| LK638S \| PKU	NA	NA	NA	NA	NA
Os XI-adm: XL628S \| XL628S \| PKU	OsXL628S_11g0134000	RBH	None	None	None
Os GJ-temp: 02428 \| 02428 \| SICAU	NA	NA	NA	NA	NA
Os cB: Basmati1 \| Basmati1 \| SICAU	NA	NA	NA	NA	NA
Os O.glaberrima: Ogla \| OglaRS2 \| DIADE	NA	NA	NA	NA	NA
Os XI-1A: CN1 \| CN1 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: D62 \| D62 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: DG \| DG \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: DHX2 \| DHX2 \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: FH838 \| FH838 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: FS32 \| FS32 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: G46 \| G46 \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: G630 \| G630 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: G8 \| G8 \| SICAU	NA	NA	NA	NA	NA
Os XI-1A: II32 \| II32 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: J4155 \| J4155 \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: Kosh \| Kosh \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: KY131 \| KY131 \| SICAU	NA	NA	NA	NA	NA
Os GJ-trp: Lemont \| Lemont \| SICAU	NA	NA	NA	NA	NA
Os GJ-adm: LJ \| LJ \| SICAU	NA	NA	NA	NA	NA
Os GJ-sbtrp: NamRoo \| NamRoo \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: R498 \| R498 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: R527 \| R527 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: S548 \| S548 \| SICAU	NA	NA	NA	NA	NA
Os XI-2: TM \| TM \| SICAU	NA	NA	NA	NA	NA
Os XI-3: Tumba \| Tumba \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: WSSM \| WSSM \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: Y3551 \| Y3551 \| SICAU	NA	NA	NA	NA	NA
Os XI-1B: Y58S \| Y58S \| SICAU	NA	NA	NA	NA	NA
Os XI-adm: YX1 \| YX1 \| SICAU	NA	NA	NA	NA	NA
Os GJ-temp: ZH11 \| ZH11 \| SICAU	NA	NA	NA	NA	NA

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