Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_11g0011540 | OGI:11050840 | 12/50 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr11:12788635-12789346 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | 127518_132424_TRA1117100,127518_132424_TRA1117200,125619_132424_INV1114760,DHX2_132424_INV1118840,IR64_132424_OTH1116240,IR64_132424_INV1116000_1,LJ_132424_DEL1119030,CN1_132424_OTH1118750,117534_132424_DEL1148050,D62_132424_DEL1145090,132278_132424_DEL1151940,132278_132424_OTH1121780,132278_132424_INV1121740,Azucena_132424_DEL1159990,Tumba_132424_DEL1139360,Tumba_132424_INV1114660,LK638S_132424_INV1125380,G630_132424_DEL1143930,WSSM_132424_OTH1116360,HZ_132424_INV1124250,R527_132424_INV1117310,125827_132424_OTH1120660,DG_132424_OTH1116650,DG_132424_INV1116190_8,ZS97RS3_132424_INV1126530,Lemont_132424_OTH1123770,Lemont_132424_INV1123710,XL628S_132424_INV1125370,Basmati1_132424_DEL1125340,J4155S_132424_INV1127680,128077_132424_DEL1123170,128077_132424_DEL1155830,NamRoo_132424_INV1122070,NamRoo_132424_OTH1122080,FH838_132424_OTH1120250,R498_132424_INV1114440,TM_132424_DEL1147520,TM_132424_OTH1119100,G8_132424_OTH1112240,127742_132424_INV1118620,II32_132424_DEL1147380,II32_132424_TRA1118340,II32_132424_DEL1118390,II32_132424_DEL1118470_1,J4155_132424_INV1116510,
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| DNA seq | atggttggtggcggcgcaggcggcggcggcgaggctggcgacggcggccaggagttggaggcggcggcggccatggcggtggtggttccggtgaactccggtgagggcaacgggcctggtaagcatcagggaaggaaggggagcgcggtggtggcggcaactcggcctggggcggtcgggagcggcggcgcgccgttcggctggcggcggccgaacagagggcgatgccgggaggcggcaccggtggcattccggcgacggattggatagggaaagagaggggaaagggagtactcggcatggagaatccgtttttaccttcaattttagaggatttgcgatgtatgcgacgaatttgggagctctatcaatggcgcaaatttagggtttggggatttttccttcggtgatgatgatttgattcagcggaagtaggggcggacttgaggaggtgaaagaggttgaaaatgcgcttcttttgcctccagtcttgagccttcttgttgagagacgaaggagttacagaagcgggaagatggaggtgtcgcggcggcattcattcgtcgttcgtcctcgtgcgagcgtgtgcgggagtgtggcgcgcgcggggcggcatgagctcagcgcgagcgcggcgcgaggcagcacagggttggcgcgaggcagctcgagcgcggcttgcatcgggctggcttcgcctggctcggcctag
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| CDS seq | MVGGGAGGGGEAGDGGQELEAAAAMAVVVPVNSGEGNGPGKEGERGGGGNSAWGGRERRRAVRLAAAEQRAMPGGGTGGIPATDWIGKERGKGVLGMENPFLPSILEDLRCMRRIWELYQWRKFRVWGFFLRGSRGGLEEVKEVENALLLPPVLSLLVERRRSYRSGKMEVSRRHSFVVRPRASVCGSVARAGRHELSASAARGSTGLARGSSSAACIGLASPGSA |
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| Protein seq | MVGGGAGGGGEAGDGGQELEAAAAMAVVVPVNSGEGNGPGKEGERGGGGNSAWGGRERRRAVRLAAAEQRAMPGGGTGGIPATDWIGKERGKGVLGMENPFLPSILEDLRCMRRIWELYQWRKFRVWGFFLRGSRGGLEEVKEVENALLLPPVLSLLVERRRSYRSGKMEVSRRHSFVVRPRASVCGSVARAGRHELSASAARGSTGLARGSSSAACIGLASPGSA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0011540 | OsGoSa_11g0011540.01 | Chr11 | 12788635 | 12789346 | + | NAM | ||
| CDS seq | - |
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| Protein seq | MVGGGAGGGGEAGDGGQELEAAAAMAVVVPVNSGEGNGPGKEGERGGGGNSAWGGRERRRAVRLAAAEQRAMPGGGTGGIPATDWIGKERGKGVLGMENPFLPSILEDLRCMRRIWELYQWRKFRVWGFFLRGSRGGLEEVKEVENALLLPPVLSLLVERRRSYRSGKMEVSRRHSFVVRPRASVCGSVARAGRHELSASAARGSTGLARGSSSAACIGLASPGSA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0011670 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0011630 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014220 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0011360 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0011740 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0011990 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011470 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: XL628S | XL628S | PKU | NA | NA | NA | NA | NA |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1122763900.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1131230900.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1117800900.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: Kosh | Kosh | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | NA | NA | NA | NA | NA |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1123446100.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | NA | NA | NA | NA | NA |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
