Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsG630G1180003162.01 | OGI:11050841 | 29/50 | Os XI-adm: G630 | G630 | SICAU | Chr11:13573960-13575308 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | 127564_G630_INS1115260,127564_G630_INV1114650,XL628S_G630_INS1115320,Lemont_G630_INS1121940,CN1_G630_TRA1138680,ZS97RS3_G630_INS1126160,ZS97RS3_G630_INV1126030,117534_G630_DEL1114340,117534_G630_DEL1114640,117534_G630_DEL1115650,125619_G630_INS1116420,125619_G630_DEL1117240_1,125619_G630_INV1115630,DG_G630_DEL1135320,ZH11_G630_INS1121030,HZ_G630_INS1114200,HZ_G630_DEL1116970,J4155S_G630_INS1114400,Kosh_G630_INS1121560,LK638S_G630_INS1117850,LK638S_G630_INV1117410,TM_G630_DEL1119410,02428_G630_INS1121590,D62_G630_INS1116850_2,LJ_G630_OTH1118850,Basmati1_G630_INS1122030,Basmati1_G630_INV1121270,Azucena_G630_INS1121470,Azucena_G630_INV1121310,OglaRS2_G630_DEL1136590_3,WSSM_G630_INS1120140_1,132424_G630_INS1115820,132424_G630_INV1115290,FH838_G630_DEL1121400_1,G46_G630_INS1118340,G46_G630_INS1119790,G46_G630_TRA1118310,127652_G630_INS1123070,127652_G630_DEL1124750,127652_G630_INV1122340,128077_G630_INS1127490_1,Nipponbare_G630_DEL1112320,G8_G630_TRA1116840_1,125827_G630_DEL1139170_1,II32_G630_DEL1132210,II32_G630_OTH1116610,II32_G630_DEL1120820,II32_G630_DEL1120840,Y58S_G630_INV1113820,132278_G630_INS1150480_1,J4155_G630_INS1113120,J4155_G630_DEL1114190,J4155_G630_DEL1115250,J4155_G630_INV1112620,117425_G630_INS1119530,KY131_G630_INS1122080,NamRoo_G630_DEL1130950,NamRoo_G630_INV1121570,NamRoo_G630_OTH1121920,DHX2_G630_TRA1120190,IR64_G630_DEL1128250,127518_G630_INS1116870,FS32_G630_DEL1116930_2,
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| DNA seq | AATTCTGTTGTATATCGCGTGAATTCGACGTGGTTTCGAGCTCCGTTTTTCCGGCGAACCCTAACTAATCCGTCGCCGATTCTTCCCGTATCCGAGCCGATCTCCTCCTCCTTTGGCTATAAATAGCAGCCCCTCGGCATCCTCTTCCGTTTCCCTCTTTTTCCCAAATTTTTGGCCAACCCTAGCCGCCTCCCCACGTCCGGCTTTTCTCTCCTTTGCCGGCCGCCGCTCTAGCCGCCCCGTGCTGCCACCCTGGTCGACGCCGCCCTATTCCGTCGCTCCCCTCGGCTTCGCAGTGAAGAGCTCCACCCTGTCCACCAGTTTCCCTCCGCCAAATCCCGCCGGAAGCCGCTGTCACCGTGAAGGCCGAGTTCGCTGCCTCGGTTTGATCTCTGGTCGAGCCTCGCCATCGACTCCGTGGTCGCCGAACCCCGCCATCTCTTCCTTCGGCGTCGCAGCACCAAGACGAAGCCCAGCAGCCACCTCCGTGAAGACGCAAGCCATTGGAGCACTGTCATCACCGCCGTGAAGCCGATCTGTTCCATCTTCAGTCGTGCCGCTCGTCGCCGTCCATCGCCGCCTTCGCTCACCGTCGCCACCCTCGGGATCGCAGGAGCGAGGTGAAGACCGTCTGCCCCTCGGTTGCTGCATCCCCTCGCCGAAACTCCGCCGTCACCGTGGATAGAGCCACGCCGCCACCTCAATCTCATCGCCGGCCATCTCCCGTCGTTGTCCATGGTCGTGCCGCCCTTTGGTGAGTTCGTCGTCGCCTCCTCTCTCTCTCCCGGAGCTGTCCCTTATCACCGGAGCATCGCAGTTAAGTTCTCGTTGCTATCCTGAGCCATCTTCTAATGACGATGTTATCGCTGACATCAGCACCATCTCAAGCCATTGCAAAATCAATATAAATTTGTCATCTCTTTTCAATGACATATTATTTCTTTTTAATATTTGTCATCTACCAAGTATGATCTAATCTATTTGATGTGACCATGGCTACCACGGATGCAACCATTGCTCACATCATGGATGAACAAGAAGATATCGAGATCACATCGTCCAAGTGCTGGAATCCGATTCGGCCACCTGCTATACTGCTGACTTCAAACGGCCGCCGAATCTGCATACGACCTCCGTTTTTGGCCCGTGAGTACTTGATGGAAAGCTCTCGGATCCCTCTTTCCAACGGATCCAGCCTCATCTCCGAATTCCATCTCGTGTGGCCGGAATCACAGGCACAAGGTGCTGCGTCACCTATAATGGGCCTATGGGCTTGTAACTTCATTTGGGACCCCGGCCCAGGTGGGGCCCATGTGGGGTGCGCCCCAACCAGGTGGAGCACGACCCTA
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| CDS seq | MDNDGRWPAMRLRWRRGSIHGDGGVSARGCSNRGADGLHLAPAIPRVATVSEGGDGRRRAARLKMEQIGFTAVMTVLQWLASSRRWLLGFVLVLRRRRKRWRGSATTESMARLDQRSNRGSELGLHGDSGFRRDLAEGNWWTGWSSSLRSRGERRNRAASTRVAARGG |
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| Protein seq | MDNDGRWPAMRLRWRRGSIHGDGGVSARGCSNRGADGLHLAPAIPRVATVSEGGDGRRRAARLKMEQIGFTAVMTVLQWLASSRRWLLGFVLVLRRRRKRWRGSATTESMARLDQRSNRGSELGLHGDSGFRRDLAEGNWWTGWSSSLRSRGERRNRAASTRVAARGG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsG630G1180003162.01 | OsG630G1180003162.01.T01 | Chr11 | 13573960 | 13575308 | - | IGDBv1 | ||
| CDS seq | ATGGACAACGACGGGAGATGGCCGGCGATGAGATTGAGGTGGCGGCGTGGCTCTATCCACGGTGACGGCGGAGTTTCGGCGAGGGGATGCAGCAACCGAGGGGCAGACGGTCTTCACCTCGCTCCTGCGATCCCGAGGGTGGCGACGGTGAGCGAAGGCGGCGATGGACGGCGACGAGCGGCACGACTGAAGATGGAACAGATCGGCTTCACGGCGGTGATGACAGTGCTCCAATGGCTTGCGTCTTCACGGAGGTGGCTGCTGGGCTTCGTCTTGGTGCTGCGACGCCGAAGGAAGAGATGGCGGGGTTCGGCGACCACGGAGTCGATGGCGAGGCTCGACCAGAGATCAAACCGAGGCAGCGAACTCGGCCTTCACGGTGACAGCGGCTTCCGGCGGGATTTGGCGGAGGGAAACTGGTGGACAGGGTGGAGCTCTTCACTGCGAAGCCGAGGGGAGCGACGGAATAGGGCGGCGTCGACCAGGGTGGCAGCACGGGGCGGCTAG
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| Protein seq | MDNDGRWPAMRLRWRRGSIHGDGGVSARGCSNRGADGLHLAPAIPRVATVSEGGDGRRRAARLKMEQIGFTAVMTVLQWLASSRRWLLGFVLVLRRRRKRWRGSATTESMARLDQRSNRGSELGLHGDSGFRRDLAEGNWWTGWSSSLRSRGERRNRAASTRVAARGG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g22800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | OsHZ_11g0134600 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_11g0132200 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_11g0129900 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_11g0133400 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1121564200.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1180002212.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1180201601.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1133480400.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1180002079.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1130028200.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1180003433.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1122848800.01 | SBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1180002259.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1117338700.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1180002737.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1180003013.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1180002381.01 | SBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1180203646.01 | SBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1180003194.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1180002530.01 | SBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1129130800.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1180002917.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1180201845.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1180002406.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1180002732.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1180003287.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1180002353.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1180002379.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1180002435.01 | RBH | None | None | None |
