Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsFH838G1231555100.01 | OGI:12006586 | 1/50 | Os XI-adm: FH838 | FH838 | SICAU | Chr12:5552457-5553218 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | Tumba_FH838_INV1203220,Tumba_FH838_OTH1203260,127518_FH838_INV1204250,127518_FH838_OTH1204270,Y58S_FH838_INV1204110,Y58S_FH838_OTH1204130,TM_FH838_INV1205410,TM_FH838_OTH1205430,HZ_FH838_INV1203290,HZ_FH838_OTH1203310,R527_FH838_INV1202910,R527_FH838_OTH1202930,G46_FH838_INV1202340,G46_FH838_OTH1202360,WSSM_FH838_INV1202540,WSSM_FH838_OTH1202590,J4155_FH838_INV1204160,J4155_FH838_OTH1204180,125827_FH838_INV1203750,125827_FH838_OTH1203770,125619_FH838_INV1206920,125619_FH838_OTH1206960,132424_FH838_INV1203700,132424_FH838_OTH1203720,J4155S_FH838_INV1204220,J4155S_FH838_OTH1204240,127742_FH838_INV1203240,127742_FH838_OTH1203260,S548_FH838_INV1202690,S548_FH838_OTH1202710,DG_FH838_INV1202760,DG_FH838_OTH1202780,CN1_FH838_INV1202560,CN1_FH838_OTH1202600,R9311_FH838_INV1203530,R9311_FH838_OTH1203550,FS32_FH838_INV1203170,FS32_FH838_OTH1203190,G8_FH838_INV1203590,G8_FH838_OTH1203630,D62_FH838_INV1203700,D62_FH838_OTH1203720,G630_FH838_INV1203070,G630_FH838_OTH1203090,YX1_FH838_INV1205110,YX1_FH838_OTH1205130,II32_FH838_INV1203060,II32_FH838_OTH1203080,127652_FH838_INV1207060,127652_FH838_OTH1207110,IR64_FH838_INV1203630,IR64_FH838_OTH1203650,
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| DNA seq | ATGAAAAGCTGCAGTGAGCCAGTGACACTTACGCAGCACCAAAACTCCCTCTGTCGAACACCTTGTGAGTGCACTGTTCATCTTCTTCCTTCAAACAATCTAGAGTTTGTGAGCCAAGTCATCGATTGGGGCTGTCAAAGGACGGCGATCTCTCCGATTCTGGCTTCCCAGGCAGAGGAGGGCATTGACGCGGTCTCTTGCGGCGAAGTGCGCGAGCACAGATTCCTCGAGCGCGCCGCGCATCCTGTGCTTGTCCGGCAGCAGGTACATCATCGTGTTCATCGGGCGACACTTACGCCTGGCGCTTCTCTCGGCGCTGCCGAACCGCAGGTGCTCATCGTCCGCGTCGTCAGGGGACCTGTTGGCCAAGACGGAGCCCATCAAGCACATGGGAGGGCTCCCATGACAGCGCATGAGAGGGCTGTGTCCAGTTGCTCAGCTGTGTGCCCAAGCTCACCGTCACGCTGTCGCGGCTCCGGCGGACGATGCTGGTGCAGTGTGATGGCGGCGAATGGGCCGAACGAGAAGGCTATCATCACACGTGGACAGGAGCCATTGGATGCGCAAGCGACGGCGATCGGAAGTCCAACGTCTCTCTACGTCAGAGTAGCCGGTTCCCATGCTAATATATGTGTAGATGGCAGTGCAATCGGCCGGCTGGTTGGTTGTCTTAATTTGCTGCTGTACCTATGCCATGAGATTGATCTGTCTCCCTCACAGCAAGGCACCGAAGCAATATGTCGTAGCAATCCGTCCGTTTAG
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| CDS seq | MKSCSEPVTLTQHQNSLCRTPCECTVHLLPSNNLEFVSQVIDWGCQRTAISPILASQAEEGIDAVSCGEVREHRFLERAAHPVLVRQQVHHRVHRATLTPGASLGAAEPQVLIVRVVRGPVGQDGAHQAHGRAPMTAHERAVSSCSAVCPSSPSRCRGSGGRCWCSVMAANGPNEKAIITRGQEPLDAQATAIGSPTSLYVRVAGSHANICVDGSAIGRLVGCLNLLLYLCHEIDLSPSQQGTEAICRSNPSV |
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| Protein seq | MKSCSEPVTLTQHQNSLCRTPCECTVHLLPSNNLEFVSQVIDWGCQRTAISPILASQAEEGIDAVSCGEVREHRFLERAAHPVLVRQQVHHRVHRATLTPGASLGAAEPQVLIVRVVRGPVGQDGAHQAHGRAPMTAHERAVSSCSAVCPSSPSRCRGSGGRCWCSVMAANGPNEKAIITRGQEPLDAQATAIGSPTSLYVRVAGSHANICVDGSAIGRLVGCLNLLLYLCHEIDLSPSQQGTEAICRSNPSV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsFH838G1231555100.01 | OsFH838G1231555100.01.T01 | Chr12 | 5552457 | 5553218 | + | IGDBv1 | ||
| CDS seq | ATGAAAAGCTGCAGTGAGCCAGTGACACTTACGCAGCACCAAAACTCCCTCTGTCGAACACCTTGTGAGTGCACTGTTCATCTTCTTCCTTCAAACAATCTAGAGTTTGTGAGCCAAGTCATCGATTGGGGCTGTCAAAGGACGGCGATCTCTCCGATTCTGGCTTCCCAGGCAGAGGAGGGCATTGACGCGGTCTCTTGCGGCGAAGTGCGCGAGCACAGATTCCTCGAGCGCGCCGCGCATCCTGTGCTTGTCCGGCAGCAGGTACATCATCGTGTTCATCGGGCGACACTTACGCCTGGCGCTTCTCTCGGCGCTGCCGAACCGCAGGTGCTCATCGTCCGCGTCGTCAGGGGACCTGTTGGCCAAGACGGAGCCCATCAAGCACATGGGAGGGCTCCCATGACAGCGCATGAGAGGGCTGTGTCCAGTTGCTCAGCTGTGTGCCCAAGCTCACCGTCACGCTGTCGCGGCTCCGGCGGACGATGCTGGTGCAGTGTGATGGCGGCGAATGGGCCGAACGAGAAGGCTATCATCACACGTGGACAGGAGCCATTGGATGCGCAAGCGACGGCGATCGGAAGTCCAACGTCTCTCTACGTCAGAGTAGCCGGTTCCCATGCTAATATATGTGTAGATGGCAGTGCAATCGGCCGGCTGGTTGGTTGTCTTAATTTGCTGCTGTACCTATGCCATGAGATTGATCTGTCTCCCTCACAGCAAGGCACCGAAGCAATATGTCGTAGCAATCCGTCCGTTTAG
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| Protein seq | MKSCSEPVTLTQHQNSLCRTPCECTVHLLPSNNLEFVSQVIDWGCQRTAISPILASQAEEGIDAVSCGEVREHRFLERAAHPVLVRQQVHHRVHRATLTPGASLGAAEPQVLIVRVVRGPVGQDGAHQAHGRAPMTAHERAVSSCSAVCPSSPSRCRGSGGRCWCSVMAANGPNEKAIITRGQEPLDAQATAIGSPTSLYVRVAGSHANICVDGSAIGRLVGCLNLLLYLCHEIDLSPSQQGTEAICRSNPSV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: XL628S | XL628S | PKU | NA | NA | NA | NA | NA |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: FH838 | FH838 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: Kosh | Kosh | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | NA | NA | NA | NA | NA |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | NA | NA | NA | NA | NA |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
