Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCN1G1233872600.01 | OGI:12026280 | 35/50 | Os XI-1A: CN1 | CN1 | SICAU | Chr12:9112321-9116062 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | LK638S_CN1_INS1209260,YX1_CN1_INS1211310,DG_CN1_INS1208590,G46_CN1_INS1209410,127518_CN1_INS1209280,Azucena_CN1_INS1218000,LJ_CN1_INS1218770,ZS97RS3_CN1_INS1208270,125619_CN1_INS1218940,117534_CN1_INS1218300,XL628S_CN1_INS1209430,
More
|
||||||||||
| DNA seq | TGCAGTCCATAATGACTGTCTGAAGTGAGCATAACATTCCATTGTTGTGATCATCTTTGCAAAATTCTCAGGTCCATCACAAAATGCACACAAACAGGTGGCGCATAGTAATAGACACACATACAGGGGCATCAGTTTTGCAATCCAGTGCACTAGAATTGACTGATAGATATTTTACATCGGATTAACATAGCATACATTACACATGGTGCACTATAATGGACTGATAAGTCTTAACTGATAACCTAGGCAAAGTGCATAGCATCCATTACATATGGTGCAGCTAGAACAAACAGCATAATACTACATATGGCAGGAAACAACTTAATACTAGATTTCGCCTAATACCACATTAGGGGGGAGGGGGCACATAGATGTTGTTCATCCTTCACAGTTGTTGAGGAGCTCAAGGCTAAGAGTAAGCTCAGCATCGTTCTCACTGAACATGAAGACACAAACATCACATAGCTCGAATAATTTGTCTCCAACCAACTTATTCCATCCAGTTGTGAAGGTTGCTTGCTTATCTTTCGATTTCATTAGTCTCATCGGGTAGGAAACAGTTGATCCGACCACAGTCACAAGCAAATCTTCAATTGGAAGGTGTTCGTTTATGTACTGCTCGCTAAATGGTATGGAGAAGGCCTGAAAAATAAATACATGACAGTTACACTCAGGACAAGTACGGCTGAAGAAATGCAAAAGCGGTGGAATTAAAAGGTCAAACATACCATTTTTCCCTTTTTCAGATTAGTCTTATGTATCTCATACACATACAGTGAAATCTTAGGCAAATTGCTTGCTGCAATGCAGGCAAGTTGGTACTGCATCTTGTGTGTTAAAACAATGTATCTGGATCAAAATGTATTGAAATTTTTCTTTCAAAATATGTCTTTCAAGCTATTCTGTATGATTTCTGTTTCCCTAATTTCAATCCAACTGTAAGATTTTTGTTTCCCTAATTTCAATCCATCATCACCCATCCAAAATATACTGCCCAAACATTGAATAAAAACCACAAATTGCAATGAATAACACAAACCTTTTCGATCGGTCTCCATCCTCTCTCTGCATGTTCTGCCACACCAAGTCGGGATTTTGGACTATTTGCCATCCTCCTGAATGGCGTATTCCCAAATGCCATCTTCCCAAATAACTTTGATGATTTGCCATCCGGGTCTACTGATTTGTTTCTATTTTACCACTATTCACCTCAAACTCAGCAAATTGAGTAGAAAATGACCTCACTACCCCTCCCATTTCTCCTTTCCCTTCTTCCTTCTTGCTCTCAGGCATTAGTGATGTGGCGGAGCAGTCTTCGGCGTCTTCTGCGGCGGTGGCATCGCTCATGCTGCTGCTACCCTACAAGAGGTTCAACAGCCCATACATCACACAAAATCGAGCCTGACACCACCCGTCCTGTGCCGATGATCGATCTCGCCAGTGGAGTGGCACCCGCGCACATGGATAGACACCCAGAGAAACTTCTGGAACACAGCTGCCATTAGTGCCAACCGGATGCGCGTCCCTGTCCACCACGAGTCGAGCCAAAGAAATAATGTCGGCTATGAAGCGACTCGACAAACTTGATGGCTGGTGGTGCATTAACTGAACAGGTCAGTAATTGAAGCCGGTGAGCATGATCTCCCCAAGGTAGCACATGAATAGGACGTCTACGGGACAGCTTTCCTACGCTGACGTCGGCGTCGTTGTCCTTCTGATGGCCGTGGCAGCTCCATTCATCGGTGAACCTTTCTGACACGCATGTCGTGTTGTACTCGGAGGTAATGAGCGGGATGTTGGCGAGGTTGAATGCCTTGGAATGAGGGAATTGGCAATGCACAGGATGCCACGAGAAGGCCAGTCAGCTAAACACGCCGGTGTTGCGTATGGAAGGAAGAAGAAAGAAGGAAGAGGATAGATATGAGGGGCAATCAACTCATTTTCTACTCAATTTGCTGAGTTGGTGGTGAAAAGTGGCAAATTAGAAACAAAACAGTAGACCGAATGGTAAATCGTCAAAGTCATTTGGGAAGATGGCATTTGGGAATACGCCATTCAAGAGGATGGCAAATAGTCCAAAGTCCCCACCAAGTCCGAATCGCTGCCGCAAACATCGCCGACCTCACGACGAATGGCCGCTACAACCATCGCCGAGCTCTCTGGCGAATGGCATCCTGCCAATGCCCCGCCGTCGCATCGAGGCTGCCTCGCACCAAGGCCGCCGTGCCCGTCGTCACAGCAAGGCCGCCACGCCCGTCGTCGCATCAAGGCCGCCGCGCCCGCCGTCGCCCCAAGGCCGCCTTGCTTGCCGTCGCCGATGAAACTCCGATAGCCGGCCTTCCGCCGTTCAACTCGACCAATCCGCCTTGCCGTTCAACACCGCTGTACGGTTCCCTCGCCGATTTAGGGTTAAGCTTTCCCCCTCACACGATAATAGATGACGCACGCGAAATTACAAAGTTACCCTCCCACCCACGGTACCGCGTCAAACAGAAGGAGCGGTACCATGAGGTACCGACGAATCCTGTCCATTAGATGAAGCCAGATCAACGGTCATGATTTGGTACTGCATAGCCTCAAGGACAGTAAAAAAGCTCTCCAAATTTAATTTGTGCTGTCAGATAGGCGTTAAGATTCACGATTCACGTGTGGGGGAGGAAATGAAAATGTATCCGCGCATGGGATGAGGATCGACTCATCAACCGAAGCTAGTGGTTGTGCTAGATCGTGATTTTATTTGTAATATATTAGACCTATTTCTGTATTTGAAGAGAAAAAAAACTATGTTTGAAATCTCTATTCGCTGTTATGTTCCACAAAAATTAGAAAACATAAAAATTTGTGTAACTTTTATCTTTCAGGAATCCTCGAAGATGACTGATGAGGTTCTGCTCATCTTCAGATACATCTCCATTGCTCCCAAGTCCTTTAAGCATATCAACCAAGACCTTCCTTATATTAGGGGTACGTGAAATAGACACAAAAGTTATACACTTAAAATCCCCTTGTATTGTCTTGTACAATTCATTAGCTAGAGTTGTCTTTCCAAGACAACCAACAATCGAAACCACTTTGCGTTGTTCTGATGACCAATCTTTGTGCATGATCCACTTAACGATCTTCTCCCTTGGACCATCAATCCCTACGAGCCTCTCCACCTCCTCATACAATGCCAGCAGACGGGGATCAATTTCCACCATACTTGGCTCGGAGATGAAATCATCGATCTGATACCGCTTGCGACGTTGGTCCTCCTCCATAACCCGATTCTTCAGTTCTTGGATACACTCTGTGATCTGGTGTTTTCCCCATAGCTTCTTTATCTTGCTTCCTATCTTGCGAACAAAGTTGGCATTGGCATCGCCACAACTCAACTTGTGGATGAAGAGGTCGATGCAATCCTCAATATCATAAGCTAGCTCGAGCATGTTGTTCCTCCACTCCATGGTCGGCCCATCAAGCTTGTCCTCCTTGTTCGACAGATGCTCAAGCAAGACACTGATGCTGCTGAGCTCATTCCTCAAAAAGATGATATCCTTCTTCACACTTTTGAGCAGATTGTACTCTCCCTCGATCAAGGAGGAAAGCTTGGTTAGAAGGGGATTCAGCACCCCAACTGAAGCACTCACGATTGCTCCTGCCATCTCTAGCTCCGTTCCTCTCCCACACACACAGTAGCAGCTATCTCAATTGCTGTTATGCTAATGAGAGACTAATCCAACCATTTGACTTTAAGGTG
More
|
||||||||||
| CDS seq | MAGAIVSASVGVLNPLLTKLSSLIEGEYNLLKSVKKDIIFLRNELSSISVLLEHLSNKEDKLDGPTMEWRNNMLELAYDIEDCIDLFIHKLSCGDANANFVRKIGSKIKKLWGKHQITECIQELKNRVMEEDQRRKRYQIDDFISEPSMVEIDPRLLALYEEVERLVGIDGPREKIVKWIMHKDWSSEQRKVVSIVGCLGKTTLANELYKTIQGDFKCITFVSISRTPNIRKVLVDMLKGLGSNGDVSEDEQNLISHLRGFLKDKRPSPYHLASST |
||||||||||
| Protein seq | MAGAIVSASVGVLNPLLTKLSSLIEGEYNLLKSVKKDIIFLRNELSSISVLLEHLSNKEDKLDGPTMEWRNNMLELAYDIEDCIDLFIHKLSCGDANANFVRKIGSKIKKLWGKHQITECIQELKNRVMEEDQRRKRYQIDDFISEPSMVEIDPRLLALYEEVERLVGIDGPREKIVKWIMHKDWSSEQRKVVSIVGCLGKTTLANELYKTIQGDFKCITFVSISRTPNIRKVLVDMLKGLGSNGDVSEDEQNLISHLRGFLKDKRPSPYHLASST |
||||||||||
| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCN1G1233872600.01 | OsCN1G1233872600.01.T01 | Chr12 | 9112321 | 9116062 | - | IGDBv1 | ||
| CDS seq | ATGGCAGGAGCAATCGTGAGTGCTTCAGTTGGGGTGCTGAATCCCCTTCTAACCAAGCTTTCCTCCTTGATCGAGGGAGAGTACAATCTGCTCAAAAGTGTGAAGAAGGATATCATCTTTTTGAGGAATGAGCTCAGCAGCATCAGTGTCTTGCTTGAGCATCTGTCGAACAAGGAGGACAAGCTTGATGGGCCGACCATGGAGTGGAGGAACAACATGCTCGAGCTAGCTTATGATATTGAGGATTGCATCGACCTCTTCATCCACAAGTTGAGTTGTGGCGATGCCAATGCCAACTTTGTTCGCAAGATAGGAAGCAAGATAAAGAAGCTATGGGGAAAACACCAGATCACAGAGTGTATCCAAGAACTGAAGAATCGGGTTATGGAGGAGGACCAACGTCGCAAGCGGTATCAGATCGATGATTTCATCTCCGAGCCAAGTATGGTGGAAATTGATCCCCGTCTGCTGGCATTGTATGAGGAGGTGGAGAGGCTCGTAGGGATTGATGGTCCAAGGGAGAAGATCGTTAAGTGGATCATGCACAAAGATTGGTCATCAGAACAACGCAAAGTGGTTTCGATTGTTGGTTGTCTTGGAAAGACAACTCTAGCTAATGAATTGTACAAGACAATACAAGGGGATTTTAAGTGTATAACTTTTGTGTCTATTTCACGTACCCCTAATATAAGGAAGGTCTTGGTTGATATGCTTAAAGGACTTGGGAGCAATGGAGATGTATCTGAAGATGAGCAGAACCTCATCAGTCATCTTCGAGGATTCCTGAAAGATAAAAGGCCTTCTCCATACCATTTAGCGAGCAGTACATAA
More
|
|||||||
| Protein seq | MAGAIVSASVGVLNPLLTKLSSLIEGEYNLLKSVKKDIIFLRNELSSISVLLEHLSNKEDKLDGPTMEWRNNMLELAYDIEDCIDLFIHKLSCGDANANFVRKIGSKIKKLWGKHQITECIQELKNRVMEEDQRRKRYQIDDFISEPSMVEIDPRLLALYEEVERLVGIDGPREKIVKWIMHKDWSSEQRKVVSIVGCLGKTTLANELYKTIQGDFKCITFVSISRTPNIRKVLVDMLKGLGSNGDVSEDEQNLISHLRGFLKDKRPSPYHLASST
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0270300 | SBH | 0.617404 | 1.269819 | 4.729718 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g17090 | SBH | 0.479085 | 0.674805 | 1.002374 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0270300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008970 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009080 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009050 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008890 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008710 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0134400 | RBH | 0.0217355 | 0.039279 | 0.211674 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008760 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0149700 | RBH | 0 | 0 | 0.0456725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008670 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008950 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008870 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008850 | RBH | 0.0 | 0.0 | 0.081038 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008980 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008820 | SBH | 0.333200 | 1.206500 | 0.120301 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008680 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C12g38994 | SBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_12g0098900 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_12g0103400 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_12g0101700 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_12g0103300 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1223974000.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1237799400.01 | SBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_031441 | SBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1233870800.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1235992600.01 | SBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1227311600.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1232962800.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1231834000.01 | SBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1225700800.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1222577400.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1218647600.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1227584600.01 | SBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1235913000.01 | SBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1223628800.01 | SBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1233928400.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1219089000.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1223916000.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1225083000.01 | SBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1232107000.01 | SBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1221264600.01 | SBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1223523200.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1245341400.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1231560400.01 | SBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1226926000.01 | SBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1221844200.01 | SBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1227492000.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1229779600.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1232320400.01 | SBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1231325600.01 | RBH | None | None | None |
