Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_11g0011400 | OGI:11034410 | 26/50 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr11:12018767-12020102 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | 127652_117425_INV1128880,Y58S_117425_INV1125090,G8_117425_INV1121770,Y3551_117425_INV1123700,XL628S_117425_INV1133830,LK638S_117425_INV1134050,CN1_117425_INV1130340,127518_117425_OTH1124260,127518_117425_INV1123970,127518_117425_TRA1124740,IR64_117425_INS1121410,IR64_117425_INV1121390,125827_117425_INV1126720,R9311_117425_INV1126720,125619_117425_INV1124190,G630_117425_INV1124780,127564_117425_OTH1122570,127564_117425_INV1122280,YX1_117425_INV1121960,II32_117425_INV1122750,Tumba_117425_OTH1121540,MH63RS3_117425_INV1126660,127742_117425_INV1126480,HZ_117425_INV1134270,DG_117425_INV1126560,R527_117425_INV1124990,132424_117425_OTH1123270,132424_117425_INV1122960,S548_117425_INV1124730,J4155_117425_INV1122100,G46_117425_INV1125310,117534_117425_INV1118400,TM_117425_OTH1122700,J4155S_117425_INV1133910,ZS97RS3_117425_INV1134010,FH838_117425_INV1129420,
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| DNA seq | ATGCCTGTTTTTGATGCTAACTTGCCTGCTGGAGTTAAGGATGGGTTGGAAAGTGCTTGTGATTATTTTGATAAATGCATAAATCAGAAATTCACGAAGCTTGAGAGGAGTATTGCTATGTTAGTTGATCGTCTACCACCGCCACGTCAGGAACATGCTAGACAGGGAAGACGTCCACCACCTGAACATCATGAGTATGATGCGGAGGATGAGAGTGTAGGCTTGCATTCTGATGGAGGTGATCATCATCGCCGTCCTCGACAACCTCCTCGCCGAGGTCCTGCTTTTATGGATAGGGTTGTTGATGATATTCACCATGACAATCGCAATCGTCGTGCTGCTCGTGTTTCATTGGACGAAGGGCTTGGTAAGATAAAAATTTCCATGCCTTCTTTTTCGGGTTCTGGTGATCCGGAAGATTATCTGGAGTGGGAGATGCGTTGTGATTAAATCTTTAATAGTCACAACTATTCAGAGGATAAGAAGGTATGTCTTGCATCTATTGAATTCACCGGTTATGCTTTATCTTGGTGGAATCAATTGGAACGTGTTGGTCGTCCACATAGGAAAGAGGTTATGGCTCGCCGTTTTGTTCCTGAACATTATACTAGATCCTTGTATACGCGCTTGCAGCAACTCAAACAAGGTGATCTTAGTGTGGATGCTTATTATAAGGAGATGGAATTGTTAATGAGCCGTACAGGGGTAACAGAGAATGATGAAGCCACTATGGCTAGATTTCTTAATGGTCTCAATGATGATGTGAAAGAACGTGTTGAGATATCATACTATTATGATATACAAAGTATGGTGCACATCGCTCAAAGGGTGGAGCAGCAACTAACAAGTCGCCACACTAGTCGTTCATGTTCTTTTCAGCGAGATTGTGATGGAAGTGCCGCTAGTAAGTCGGTGTCTTTTAAGCCGGCTACTCCTAGAGATGGGACTAAACCTGCTGCTAGTTCGATGAGTAAATCCCAATCTAAAGATGAATCTACTGCTGCATCTGGTTCTAAATCACGAAGTGTAGAGTGTTATACTTGTGGAGGGAGAGGACATTATATGAGAGATTGTCCTAATCAGAAAAAGGTGTTGATGACTAAAGAAGGCTATGTTTCTGAGAGTTTATCAGAAAATTCAGAAGGTGTACAACTTGATCATATTCTTACTGCAGGCTATCGAGATATTGATGATTCATCTATGGATGGTGGTGCTGAACAGAAGAATGGGTTATCAATGCTTGCACGTGCAGTACAGCGAGATGGCTCTAATGTTGATGCAAGAGGGCAGCGCTGTAATATTTTTCAGTCAGAGTGTAAAATATAGGAAAAGGTAT
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| CDS seq | MPVFDANLPAGVKDGLESACDYFDKCINQKFTKLERSIAMLVDRLPPPRQEHARQGRRPPPEHHEYDAEDESACILMEVIIIAVLDNLLAERDCDGSAASKSVSFKPATPRDGTKPAASSMSKSQSKDESTAASGSKSRSVECYTCGGRGHYMRDCPNQKKVLMTKEGYVSESLSENSEGVQLDHILTAGYRDIDDSSMDGGAEQKNGLSMLARAVQRDGSNVDARGQRCNIFQSECKI |
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| Protein seq | MPVFDANLPAGVKDGLESACDYFDKCINQKFTKLERSIAMLVDRLPPPRQEHARQGRRPPPEHHEYDAEDESACILMEVIIIAVLDNLLAERDCDGSAASKSVSFKPATPRDGTKPAASSMSKSQSKDESTAASGSKSRSVECYTCGGRGHYMRDCPNQKKVLMTKEGYVSESLSENSEGVQLDHILTAGYRDIDDSSMDGGAEQKNGLSMLARAVQRDGSNVDARGQRCNIFQSECKI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0011400 | OsARC_11g0011400.01 | Chr11 | 12018767 | 12020102 | + | NAM | ||
| CDS seq | - |
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| Protein seq | MPVFDANLPAGVKDGLESACDYFDKCINQKFTKLERSIAMLVDRLPPPRQEHARQGRRPPPEHHEYDAEDESACILMEVIIIAVLDNLLAERDCDGSAASKSVSFKPATPRDGTKPAASSMSKSQSKDESTAASGSKSRSVECYTCGGRGHYMRDCPNQKKVLMTKEGYVSESLSENSEGVQLDHILTAGYRDIDDSSMDGGAEQKNGLSMLARAVQRDGSNVDARGQRCNIFQSECKI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g21900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0011710 | RBH | 0.149844 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0011740 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0011660 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0185200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0011770 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011530 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0068900 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0011660 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011580 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0011900 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: J4155S | J4155S | PKU | NA | NA | NA | NA | NA |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_11g0181400 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | NA | NA | NA | NA | NA |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_001831 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1132492100.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1133523300.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1129543600.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1123637900.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1121357700.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1124953800.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: Kosh | Kosh | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1118528500.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | NA | NA | NA | NA | NA |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0508554200.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1119936300.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1122372900.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | NA | NA | NA | NA | NA |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1129808200.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
